RetrogeneDB ID: | retro_cfam_238 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 6:54206900..54207302(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000029810 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000009702 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.57 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVENSPSPLPERAIYGFVLFLSSQFGFILYLVWAFIPESWLNSLGLTYWPQKYWAVALPVYLLIIILIGY |
MVENSPSPLPERAIYGFVLFLSSQFGFILYLVWAFIPE.WLNSLGLTYWPQKYWAVALP.Y.LI.I.IGY | |
Retrocopy | MVENSPSPLPERAIYGFVLFLSSQFGFILYLVWAFIPEPWLNSLGLTYWPQKYWAVALPIY-LITIVIGY |
Parental | VLLFGINMMSTSPLNSIHTITDNYAKNQQQKKYQEEAIPALRDIPISEVNQMFFLATKEHYAKN |
VLLFGI.MMSTSPLNSIH.I..NYAKNQQQ.KYQEEAIP.LR..PISEV..M.FLA.KE.YAKN | |
Retrocopy | VLLFGIRMMSTSPLNSIHIIIGNYAKNQQQNKYQEEAIPVLRGNPISEVSHMLFLAAKELYAKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 9 .91 RPM |
SRP017611_brain | 0 .00 RPM | 11 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .30 RPM |
SRP017611_liver | 0 .00 RPM | 4 .93 RPM |