RetrogeneDB ID: | retro_cfam_1022 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 21:38952215..38952615(+) | ||
Located in intron of: | ENSCAFG00000008607 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000009702 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.16 % |
Parental protein coverage: | 98.51 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | ENSPSPLPERAIYGFVLFLSSQFGFILYLVWAFIPESWLNSLGLTYWPQKYWAVALPVYLLIIILIGYVL |
ENSPSPL.ER.IYGFVLFLSSQFG...Y...AFI.ES.LNS.G....PQKYWAV..PVYL.I....GYVL | |
Retrocopy | ENSPSPLTERTIYGFVLFLSSQFGYVPYVIRAFISES*LNSMG*I*CPQKYWAVS*PVYLFITTVMGYVL |
Parental | LFGINMMSTSPLNSIHTITDN-YAKNQQQKKYQ-EEAIPALRDIPISEVNQMFFLATKEHYAKN |
.FGINMMS.SP...IHTI....YA.NQQQKKYQ.E..I..LRDI..SEVNQMFFLA.K....KN | |
Retrocopy | SFGINMMSRSPFIFIHTIKGQ*YANNQQQKKYQ>EKIISGLRDILFSEVNQMFFLAVK*LDTKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 9 .91 RPM |
SRP017611_brain | 0 .00 RPM | 11 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .30 RPM |
SRP017611_liver | 0 .00 RPM | 4 .93 RPM |