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Detailed information on CNT0023432


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8RWR1|JMJ30_ARATH, E-value = 3e-24

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007384, E-value = 2e-11 (V. vinifera)
CNT0042615, E-value = 1e-18 (A. thaliana)
CNT0033040, E-value = 5e-18 (P. patens)
CNT0020781, E-value = 5e-18 (Z. mays)
CNT0000589, E-value = 5e-18 (G. max)
CNT0032070, E-value = 1e-18 (O. sativa)
CNT0008755, E-value = 1e-09 (S. tuberosum)
CNT0040165, E-value = 7e-14 (S. moellendorffii)

Expression of CNT0023432

ERR364329: 4.307 RPKM

Peptides detected in this lncRNA

>peptide 1 (170 aa)
METQHHRLPMPTVELEREKLLERVFQEGGFAYVNLAVRAASGEAQAAEAAREIAWEQLHSGPWHSVRHVWRDAYAMSCLHVAEIHWSMGEVREALRALDM
GIIMGGALLRKDLDAAVKALVGDRFGFEGSSGEQEGLEGGLGGGAVACAGSRSRAEESQELDQLMTQRTR*

>peptide 2 (50 aa)
MRRLRLWWGTGLVSREVQESRKVWRVVWEVGRWPVQAPAPGQKSHKNWIS*

>peptide 3 (44 aa)
MGAVAFWAVAQRATCLEGRICHVLLACGGDTLVNGRGEGGTEGA*

Sequence

>CNT0023432
CTACTCTGGAAGGCTCGCGAGTTTCATATTGTACACCTCAGCTAGATTTCAATCCATTTCTGTCGATTGAACGATCTTAGACCCTAATTCTTTTCTCGAC
TGTTAAATTTGTAAAACCCCAATCCTTCACCAGAAACCGTAGCCTTTTCTAAATCTCGGTTTCCTTGTTTTTGTGAATTAAGAGGCAATTTCATGGAATT
CAGTCCATGATTCATCTGAAGCCCTGACTATTGTATCTGTAAATTCGGACCAGAATTTCATGGAAATGGCCCCTCTGATTTCTCTGAAACCCTAACACAC
ACTCTCTCTCGCTCTCTCTCAACCTAGCCCTCTGTAAATTGTGACTGGAAATCCTTCTCTCTCTTAAGCGTTTCTTCCTAACTAGAGATGCAACTCTGTC
ACTCTTTCTAACCCTAACCCGCTGTAAATTGTATCATCCTTCCTGGAAACACTGACTTTTGTATATTTTCACTACATATGCAGCTTTCTCACAAACACAA
ATTCAAAGCACACTCTTTCTCTCTGTAAAACTGGAGTCTTCTCACCGGATACTCACCTTTCTTCAAGCTTTCTCTGAAATTCAAAGCTTTCTCCAGATTC
CCTTTTGCAATGGCAATACTATTGAAAACCCTAAAATTCTCAGAAAAATAGATAATAAAAAGTAAAGAAAGGAAAGAGCTTTAGCTTTCTCACTCGAAAA
CTAACTCTACTTCACTTGCCATGCACCTTTCTATAAACCCCGACTTCTAAAAAACGAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGTATTCCTTACGTAAACCTTAATTATTCACACACATAAATGGAGACACAGCACCACCGTCTCCCCATGCCAACCGTAGAGCTGGAGAGAGAAAAG
CTTTTGGAAAGGGTCTTCCAAGAGGGCGGCTTTGCCTATGTTAACCTGGCAGTCCGTGCTGCCTCAGGAGAAGCGCAGGCGGCAGAGGCGGCGAGAGAGA
TAGCATGGGAGCAGTTGCATTCTGGGCCGTGGCACAGCGTGCGACATGTTTGGAGGGACGCATATGCCATGTCTTGCTTGCATGTGGCGGAGATACATTG
GTCAATGGGAGAGGTGAGGGAGGCACTGAGGGCGCTTGACATGGGCATCATTATGGGCGGTGCTTTGCTTAGGAAGGATTTGGATGCGGCGGTTAAGGCT
TTGGTGGGGGACAGGTTTGGTTTCGAGGGAAGTTCAGGAGAGCAGGAAGGTTTGGAGGGTGGTTTGGGAGGTGGGGCGGTGGCCTGTGCAGGCTCCCGCT
CCAGGGCAGAAGAGTCACAAGAACTGGATCAGTTGATGACGCAAAGAACTCGATAGCTGTTTGTTGCTAGGATACTTCAGGGGATGAAAGACGAACCCAA
ATACCAATCCTCTTGCCCTTCACATTTCTTGTGATAACTCTGGAATGTGTTGTGGGAAACAACTTTGAGAGTTTAATTATATTTTATTCTAGATCATGTA
ATTGCCACA