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Detailed information on CNT0009686


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005833, E-value = 6e-22 (V. vinifera)
CNT0042639, E-value = 2e-25 (A. thaliana)
CNT0035384, E-value = 2e-06 (P. patens)
CNT0018989, E-value = 9e-18 (Z. mays)
CNT0002612, E-value = 1e-29 (G. max)
CNT0022204, E-value = 9e-21 (A. trichopoda)
CNT0031477, E-value = 4e-20 (O. sativa)
CNT0037993, E-value = 5e-16 (S. moellendorffii)

Expression of CNT0009686

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)113.615229.93352.18415.963P. inf treated RB tissue, 24hpi (SRR864485)P. inf treated RB tissue, 48hpi (SRR865383)flesh (SRR1200975)skin (SRR1170971)020406080100120140160180200220240260

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPRVVSWLKLQPFTFAVHLCGSSEEWRLSVV*

>peptide 2 (48 aa)
MLCFYGNLLVLSTKDICEIILNLFSFKLTILRGFLFIWATFHLNKFWL*

Sequence

>CNT0009686
TTTTGGAGAAAGAAAAAAAGGAAAAGAGAAAAACGAAGGGCAAAAATGAAGGTGAAATTACTAGAATGTCCTGGTAGGAGCTAGGGTTAGTTACCACCCT
ATAAATACAAGAGGAGGCCGCATTTGCACCGTGGAGGCGGCGGAAGACGAGATAAAGAGAGTGCCGACGGTGATTTTCGAGCAAGCATGAGGGCCAAGTG
GAAGAAGAAGCGTATGAGGAGACTGAAGAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCCAGGGTCCAGATGCCTAGGGTGGTTTCTTG
GTTGAAACTGCAGCCTTTTACTTTCGCTGTCCATCTCTGTGGCAGCTCCGAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTTCATTAGTTAATCTACTA
TGTTCTATGAAGGAGCTTAGTTTTAGTTTTAAGTATTGCTAGTAAGGATGTTGTGTTTTTATGGTAACTTGCTAGTTTTGTCAACCAAAGATATATGTGA
GATTATCTTGAACCTTTTCTCTTTTAAGCTGACAATATTAAGAGGATTTCTGTTTATCTGGGCTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTA
ATACTTCATGTGACGTTCTGATGATGAACAAGTGTGAAGTGAAACAGATGACTGGTTTTGATCTAGTATGATCATGCTTGTGCT