Parental gene:

BGIOSGA027162

Aliases:None
Description:None
Organism:Rice subsp. indica (Oryza sativa indica)
Coordinates:8:16007008..16017383(-)


>BGIOSGA027162
ATGGCGAGCGACGGGCAGCTCAGGGACTGGGTCTCCGACAAGCTCATGTCCCTCCTCGGCTACTCCAAGAGCGTCGTCGT
GCAGTACGTCATCAGGCTGGCGAAGGAGTGCTCTTCCACCGGCGACCTCGTGGGGAAGCTCGTCGAATTTGGGTTCACGT
CCTCCGCGGAGACCCGGAGCTTCGCCGCGGACATCTACGCCAAGGTTCCCAGGAAGGCCAGCGGTATCAGCAATTACCAG
AAACAGGAAAGAGAGGCAGCAAAGCTTGTGAAGAAACAGAGCACTTACAAACTGTTGGCTGATGAGGAGGACAACGATGC
TGAAACCATCACATCGACGAGTCGACAGAGCTCTGCGAGTACATCCTCTAAGAGTAGAAAGCATTTTAGGAGGAAAGCTG
AAGACCAGGACGATGGGAATGATGATGATGAAACAAAAATAAAACAGGATTCTGGGAGGAATGTGAAAAGACGAACAGAA
GAGGTGGATGATGAAGATGATGGTAATGATACTGATGAAGAGCAAGAAAGGATAAGAGATCAGCAGGAAAGAGCTCAGCT
AGAAAAAAACATGAGAGAAAGAGATGCAGCCAACACTCGAAAGTTGATGGAGCGACAGTTATCTAAGGAGGAACAAGAGG
AGATCACCAGGAGATCTCAAGCAATGGACAAGAATGACACTTCAGATCTGAGAAAATTTTCAAGGCAAGCCTACTTACAG
AAGAGAAGGGACAAAAAAATCGATGAGATCAGGGATGAAATTCTAGATCATGAGTACATTTTTCAGGATGTGAAACTAAC
TGAAGCAGAAGAAAAGGAGTTCAGATACAAAAAGAAGATTTATGATCTTGTGAAGGAGCATGTTGAGAGTGCAGATGATG
TTGCTGAGTACAAAATGCCTGAAGCTTATGACATGGGTGACAGTGTCAATCAAGAAAAGAGATTCTCTGTAGCAATGCAG
CGTTACAAAGATCCTGAGGCCAGGGATAAAATGAATCCTTTTGCTGAACAAGAAGCATGGGAAGAGCACCAAATAGGAAA
GTCTAAACTGCAATTTGGATCAAAAGATAGGAAGCGGTCTTCTGATGATTATCAGTATGTATTCGAAGATGGCATTGATT
TTGTTAAATCTTCAGTCATAGAAGGAACGCAGCATGAAGAAGACTCAGATCAAGAGGATATCGATGAAAAGGATATGTTA
AAAAGGGAGCTCCAGCATGTTTCTTTGAACCAGGATGAGCGTAAAACTCTTCCAATCTATAAATTCAGGGATGAACTGCT
CAAGGCTGTTGAAGAGTATCAGGTTATTGTCATAGTAGGAGAAACTGGCTCTGGTAAAACAACACAAATACCTCAATATC
TTCATGAAGCTGGATATACAGCAAAAGGAAAGGTGGCATGTACACAACCTCGTCGAGTTGCAGCAATGAGTGTTGCAGCG
AGGGTGTCCCAAGAGATGGGTGTTAAACTAGGACATGAGGTTGGCTACTCTATAAGGTTTGAGGATTGCACGTCTGAGAA
AACATTGATTAAGTATATGACTGATGGCATGCTTCTGAGGGAGTTTCTTGGCGAACCAGATTTGGCAAGCTATAGTGTTG
TTATGGTTGATGAGGCTCATGAGCGTACACTGTCTACTGATATCTTATTTGGTTTGGTGAAGGATATTTCACGGTTTCGA
CCAGATCTAAAGTTGCTCATTTCAAGTGCAACCCTTGATGCAGAAAAATTTAGTGACTACTTTGATTCAGCTCCTATTTT
CAAGATACCTGGGAGGCGATATCCTGTTGAAGTTCATTATACAAAAGCTCCAGAAGCAGATTATATAGATGCAGCCATTG
TCACTGTTTTGCAGATACATGTGACGCAACCCCCTGGTGATATTCTTGTATTCCTTACAGGACAAGAAGAAATTGAAACA
ATTGATGAAATCCTTAAACACAGAACAAGAGGCTTAGGCACAAAGATTGCAGAACTACTTATCTGTCCTATATATGCAAA
TCTGCCAACTGAACTTCAAGCTAAGATATTTGAGCCCACCCCAGAGGGTGCTCGGAAGGTTGTTCTGGCCACTAATATAG
CAGAGACTTCATTGACCATTGATGGTATAAAGTATGTCGTTGATCCAGGGTTTTGTAAGATCAAGTCATACAATCCCCGA
ACAGGGATGGAATCTCTACTTATCAACCCTATCTCAAAGGCATCAGCAAACCAGAGGGCAGGAAGATCTGGACGCACTGG
ACCAGGAAAATGCTTCCGCCTGTACACAAGTTATAATTACATGCATGACCTTGAGGATAATACTGTTCCAGAGATTCAAA
GAACCAACCTTGCAAATGTTGTGCTTACACTTAAGAGTCTTGGTATTCATGACTTGGTTAACTTTGATTTTATGGATCCA
CCTCCATCAGAGGCTCTATTAAAGGCCCTGGAACAACTCTTTGCTCTCAGTGCACTCAACAGTCGTGGAGAATTGACCAA
GACTGGCAGAAGAATGGCAGAGTTTCCATTGGACCCTATGTTGTCAAAGATGATAGTAGCTTCAGAGAAATATAAGTGCT
CTGATGAGGTCATCTCCATTGCATCCATGTTGTCAGTTGGCAATTCTATATTCTATCGTCCAAAGGATAAACAAGTGCAT
GCAGACAATGCAAGGTTGAACTTCCACACTGGCAATGTTGGGGATCATATAGCTCTACTCAATGTTTACAACTCATGGAA
AGAAACAGACTATTCAACACAGTGGTGCTATGAAAACTATATACAGGTCCGCAGCATGAAGAGAGCAAGAGATATTCGTG
ATCAACTGGAGGGACTTCTAGAAAGAGTTGAGATTGAGATTTCTTCAAATGCCAGCGATTTGGATGCTATTAAAAAGGCT
ATAACATCAGGTTTCTTCCATCATTCTTCACGGTTGCAGAAGAATGGTTCATATAGAACTGTTAAGAACCCTCAAACTGT
ACTTCCTCGATGGGTAATATACCATGAATTAGTCCTTACAACAAAAGAATATATGCGTCAGGTAACGGAACTGAAGCCCG
ACTGGCTGGTAGAAATAGCGCCACACTATTATCAACTAAAAGACGTTGACGACACTGGGACTAAGAAGCTGCCTAAGGGC
CAAGGACGAGCTGCATTGTAA

Species Parental gene accession Homology type Retrogenes number
Brassica oleracea Bo5g087070 ortholog_many2many 1 retrogene
retro_bole_7,
Brassica rapa Bra010168 ortholog_many2many 1 retrogene
retro_brap_26,
Brachypodium distachyon BRADI1G61220 ortholog_one2one 1 retrogene
retro_bdis_4,
Glycine max GLYMA06G21821 ortholog_many2many 1 retrogene
retro_gmax_7,
Leersia perrieri LPERR08G09260 ortholog_one2one 1 retrogene
retro_lper_14,
Hordeum vulgare MLOC_5589 ortholog_one2one 1 retrogene
retro_hvul_14,
Oryza meridionalis OMERI08G09070 ortholog_one2one 1 retrogene
retro_omer_5,
Oryza nivara ONIVA08G11780 ortholog_one2one 1 retrogene
retro_oniv_26,
Oryza punctata OPUNC08G10350 ortholog_one2one 1 retrogene
retro_opun_23,
Oryza glaberrima ORGLA08G0098600 ortholog_one2one 1 retrogene
retro_ogla_26,
Oryza rufipogon ORUFI08G12410 ortholog_one2one 1 retrogene
retro_oruf_44,
Solanum tuberosum PGSC0003DMG402024649 ortholog_many2many 1 retrogene
retro_stub_33,
Prunus persica PRUPE_ppa000714mg ortholog_many2many 1 retrogene
retro_pper_32,
Sorghum bicolor Sb04g022460 ortholog_one2many 1 retrogene
retro_sbic_37,
Setaria italica Si021302m.g ortholog_one2one 1 retrogene
retro_sita_41,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_oind_65 69.22 59.08
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Download FASTA sequences of all BGIOSGA027162 retrocopies