Parental gene: | TCM_045111 |
| Aliases: | None |
| Description: | Eukaryotic aspartyl protease family protein |
| Organism: | Cacao (Theobroma cacao) |
| Coordinates: | 10:22401825..22404066(-) |
>TCM_045111
ATGAAAACCCATCTTGTTTCTCTTGTTTTCCTCTTCTTTTCCCTAGCCGAAGGTCTGCACCCCAAATGTGACACCCAAGA
CCATGGCTCAAACCTCCAAGTGTTCCACATTTACAGCCCATGCTCACCTTTCAAACCCTCAAAGCCACTCTCATGGGAAG
AGGATTTGCTCCAAACGCAAGCCAAGGACCAGGCCAGGCTGCAGTACTTGTCAAGCCTGGTGGCTAAGAAATCCGTGGTG
CCAATAGCTTCAGGCAGGCAGATTGTGCAGAGTCCAACTTACATTGTCAGGGCCAAAATTGGAACCCCACCTCAAACCAT
GCTCATGGCCATGGATACTAGCAATGATGCTGCTTGGTTACCTTGCTCAGGCTGCCTTGGCTGCTCTTCTAGTGTTTTCG
ACAATGCTAAATCAACCACATTCAAGGCCCTTGGCTGCCAAGCTGGTCAGTGCAAGCAGGTACCAAACCCCACTTGCGAT
GGAAGCGCGTGCATATTCAACATGACCTACGGTGGTTCAAGCATTGCAGCAAACCTCTCACAGGACACAATCACCTTAGC
CACTGACCCTGTCCCGAGCTACACTTTCGGTTGTCTCCAAAAGACAACCGGTAACTCGGTGCCGCCGCAGGGCCTACTGG
GGCTGGGCAGAGGTCCACTGTCACTTCTCTCACAAACCCAAAACTGGTACCAATCCACATTTTCATACTGCTTGCCTAGC
TTTAGGTCTCTAAACTTCTCTGGGTCATTGAGACTTGGGCCAGTTGGGCAGCCATTAAGGATCAAGTACACCCCATTGCT
GAAGAATCCTAGAAGACCATCACTTTACTTTGTGAATCTGATTGGAATTAGAGTTGGAAGGAAAATTGTTGATATCCCAC
CAAGTGATTTAGCTTTCAACCCTACCACCGGTTCTGGTACCATTATTGATTCTGGTACCGTCTTCACCCGGCTAGTAGCA
ACGGCCTACGTAGCTGTCCGGGACGAGTTCCGAAGGCGAGTTAGGGTCACCAACGTGACATCCCTCGGTGGGTTCGACAC
ATGTTACACCGGCCCAATCGTGGCACCGACGATAACGTTCATGTTCGCAGGCATGAACGTGACACTGCCACAAGACAACC
TACTAATCCACAGCACGGCAGGCAGCATCACATGCTTGGCCATGGCATCCGCACCAGAGAATATGAATTCAGTGTTGAAT
GTGATAGCCAATATGCAGCAACAGAACCATAGGGTACTTTTCGATGTGCCCAATTCGAGGCTGGGAGTGGCCCGTGAGCT
CTGCACCTAG
ATGAAAACCCATCTTGTTTCTCTTGTTTTCCTCTTCTTTTCCCTAGCCGAAGGTCTGCACCCCAAATGTGACACCCAAGA
CCATGGCTCAAACCTCCAAGTGTTCCACATTTACAGCCCATGCTCACCTTTCAAACCCTCAAAGCCACTCTCATGGGAAG
AGGATTTGCTCCAAACGCAAGCCAAGGACCAGGCCAGGCTGCAGTACTTGTCAAGCCTGGTGGCTAAGAAATCCGTGGTG
CCAATAGCTTCAGGCAGGCAGATTGTGCAGAGTCCAACTTACATTGTCAGGGCCAAAATTGGAACCCCACCTCAAACCAT
GCTCATGGCCATGGATACTAGCAATGATGCTGCTTGGTTACCTTGCTCAGGCTGCCTTGGCTGCTCTTCTAGTGTTTTCG
ACAATGCTAAATCAACCACATTCAAGGCCCTTGGCTGCCAAGCTGGTCAGTGCAAGCAGGTACCAAACCCCACTTGCGAT
GGAAGCGCGTGCATATTCAACATGACCTACGGTGGTTCAAGCATTGCAGCAAACCTCTCACAGGACACAATCACCTTAGC
CACTGACCCTGTCCCGAGCTACACTTTCGGTTGTCTCCAAAAGACAACCGGTAACTCGGTGCCGCCGCAGGGCCTACTGG
GGCTGGGCAGAGGTCCACTGTCACTTCTCTCACAAACCCAAAACTGGTACCAATCCACATTTTCATACTGCTTGCCTAGC
TTTAGGTCTCTAAACTTCTCTGGGTCATTGAGACTTGGGCCAGTTGGGCAGCCATTAAGGATCAAGTACACCCCATTGCT
GAAGAATCCTAGAAGACCATCACTTTACTTTGTGAATCTGATTGGAATTAGAGTTGGAAGGAAAATTGTTGATATCCCAC
CAAGTGATTTAGCTTTCAACCCTACCACCGGTTCTGGTACCATTATTGATTCTGGTACCGTCTTCACCCGGCTAGTAGCA
ACGGCCTACGTAGCTGTCCGGGACGAGTTCCGAAGGCGAGTTAGGGTCACCAACGTGACATCCCTCGGTGGGTTCGACAC
ATGTTACACCGGCCCAATCGTGGCACCGACGATAACGTTCATGTTCGCAGGCATGAACGTGACACTGCCACAAGACAACC
TACTAATCCACAGCACGGCAGGCAGCATCACATGCTTGGCCATGGCATCCGCACCAGAGAATATGAATTCAGTGTTGAAT
GTGATAGCCAATATGCAGCAACAGAACCATAGGGTACTTTTCGATGTGCCCAATTCGAGGCTGGGAGTGGCCCGTGAGCT
CTGCACCTAG
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Brassica oleracea | Bo8g083640 | ortholog_one2many | 1 retrogene | |
| Brassica rapa | Bra014819 | ortholog_one2many | 1 retrogene | |
| Medicago truncatula | MTR_8g039540 | ortholog_one2many | 1 retrogene | |
| Populus trichocarpa | POPTR_0001s06560 | ortholog_one2many | 1 retrogene | |
| Prunus persica | PRUPE_ppa005966mg | ortholog_one2one | 1 retrogene | |
| Vitis vinifera | VIT_13s0084g00820 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_tcac_5 | 55.06 | 97.44 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all TCM_045111 retrocopies