Parental gene:

ENSCAFG00000013934

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:18:52073116..52074289(+)


>ENSCAFG00000013934
ATGCAGCTCTTTGTCCGCGCCCAGGAGCTACACACCCTCGAGGTGACCGGCCAGGAGACGGTCGCCCAAATCAAGGCTCA
TGTAGCCTCGCTGGAGGGCATCGCCCCGGAAGATCAAGTCCTGCTCCTGGCAGGCTCGCCTCTAGAGGATGAGGCTACCC
TAGGTCAGTGTGGAGTGGAGGCTCTGACCACCCTGGAGGTAGCCGGCCGCATGCTTGGAGGTAAAGTCCATGGTTCCCTG
GCCCGTGCTGGGAAAGTAAGAGGGCAGACTCCCAAGGTGGCCAAACAGGAGAAAAAGAAGAAGAAGACAGGCCGAGCCAA
GCGACGAATGCAGTACAACCGACGCTTTGTCAATGTTGTGCCCACCTTTGGCAAGAAGAAGGGCCCCAATGCCAACTCTT
AA

Library Parental gene expression (RPM)
SRP012049_cerebellum 242 .17 RPM
SRP017611_brain 96 .14 RPM
SRP017611_kidney 640 .43 RPM
SRP017611_liver 179 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017676 ortholog_one2many 8 retrogenes
retro_amel_1, retro_amel_1065, retro_amel_1544, retro_amel_1806, retro_amel_1912, retro_amel_628, retro_amel_779, retro_amel_948,
Bos taurus ENSBTAG00000020807 possible_ortholog 1 retrogene
retro_btau_242,
Callithrix jacchus ENSCJAG00000002432 ortholog_one2many 1 retrogene
retro_cjac_1935,
Dasypus novemcinctus ENSDNOG00000004481 ortholog_one2many 5 retrogenes
retro_dnov_1406, retro_dnov_1593, retro_dnov_1651, retro_dnov_1916, retro_dnov_2021,
Dipodomys ordii ENSDORG00000003616 ortholog_one2many 2 retrogenes
retro_dord_467, retro_dord_78,
Equus caballus ENSECAG00000021956 ortholog_one2many 2 retrogenes
retro_ecab_149, retro_ecab_951,
Echinops telfairi ENSETEG00000010568 ortholog_many2many 1 retrogene
retro_etel_40,
Felis catus ENSFCAG00000024367 ortholog_one2one 9 retrogenes
retro_fcat_1163, retro_fcat_1281, retro_fcat_1777, retro_fcat_2008, retro_fcat_245, retro_fcat_349, retro_fcat_366, retro_fcat_420, retro_fcat_506,
Homo sapiens ENSG00000149806 ortholog_one2many 2 retrogenes
retro_hsap_1952, retro_hsap_2892,
Gorilla gorilla ENSGGOG00000002714 ortholog_many2many 1 retrogene
retro_ggor_559,
Loxodonta africana ENSLAFG00000001689 ortholog_one2many 1 retrogene
retro_lafr_1111,
Microcebus murinus ENSMICG00000016596 ortholog_one2many 2 retrogenes
retro_mmur_1534, retro_mmur_572,
Myotis lucifugus ENSMLUG00000015370 ortholog_many2many 3 retrogenes
retro_mluc_1070, retro_mluc_2324, retro_mluc_2390,
Macaca mulatta ENSMMUG00000018776 ortholog_one2many 1 retrogene
retro_mmul_1453,
Monodelphis domestica ENSMODG00000010095 ortholog_one2many 1 retrogene
retro_mdom_402,
Mustela putorius furo ENSMPUG00000012237 ortholog_one2many 1 retrogene
retro_mputfur_144,
Mus musculus ENSMUSG00000038274 ortholog_many2many 1 retrogene
retro_mmus_131,
Oryctolagus cuniculus ENSOCUG00000014878 ortholog_many2many 3 retrogenes
retro_ocun_139, retro_ocun_373, retro_ocun_939,
Otolemur garnettii ENSOGAG00000015013 ortholog_many2many 4 retrogenes
retro_ogar_146, retro_ogar_1491, retro_ogar_1724, retro_ogar_2545,
Pongo abelii ENSPPYG00000003077 ortholog_one2many 2 retrogenes
retro_pabe_2393, retro_pabe_3613,
Pan troglodytes ENSPTRG00000003866 ortholog_one2many 3 retrogenes
retro_ptro_1306, retro_ptro_1955, retro_ptro_1956,
Rattus norvegicus ENSRNOG00000020982 ortholog_many2many 3 retrogenes
retro_rnor_182, retro_rnor_314, retro_rnor_315,
Sarcophilus harrisii ENSSHAG00000000131 ortholog_one2many 1 retrogene
retro_shar_523,
Sus scrofa ENSSSCG00000013002 ortholog_one2many 2 retrogenes
retro_sscr_225, retro_sscr_464,
Ictidomys tridecemlineatus ENSSTOG00000003336 ortholog_one2many 1 retrogene
retro_itri_1500,
Tupaia belangeri ENSTBEG00000007492 ortholog_many2many 11 retrogenes
retro_tbel_1550, retro_tbel_1735, retro_tbel_2045, retro_tbel_27, retro_tbel_2862, retro_tbel_301, retro_tbel_3396, retro_tbel_356, retro_tbel_3741, retro_tbel_3940, retro_tbel_4687,
Tarsius syrichta ENSTSYG00000014667 ortholog_one2many 16 retrogenes
retro_tsyr_1039, retro_tsyr_1041, retro_tsyr_1319, retro_tsyr_1325, retro_tsyr_1407, retro_tsyr_1436, retro_tsyr_1463, retro_tsyr_1474, retro_tsyr_1895, retro_tsyr_223, retro_tsyr_272, retro_tsyr_416, retro_tsyr_592, retro_tsyr_755, retro_tsyr_811, retro_tsyr_842,
Tursiops truncatus ENSTTRG00000017246 ortholog_one2many 6 retrogenes
retro_ttru_1163, retro_ttru_1221, retro_ttru_1248, retro_ttru_41, retro_ttru_798, retro_ttru_901,
Vicugna pacos ENSVPAG00000005205 ortholog_one2many 1 retrogene
retro_vpac_304,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_670 68.69 73.68
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2. retro_cfam_750 77.44 100.00
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3. retro_cfam_971 93.98 100.00
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4. retro_cfam_1162 87.29 87.97
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5. retro_cfam_1598 69.17 85.71
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6. retro_cfam_1734 64.00 92.48
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7. retro_cfam_2190 75.96 77.44
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Download FASTA sequences of all ENSCAFG00000013934 retrocopies