RetrogeneDB ID: | retro_fcat_2008 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:93716619..93717009(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000006255 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000024367 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.85 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MQLFVRAQELHTLEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGTPLEDEATLGQCGVEALTTLEVAGR |
MQL.V..Q.LHTLEVTGQ..VAQIKAHVASLE..APEDQVVL....PLEDEATLGQC..E.L.TLEVA.. | |
Retrocopy | MQLLVHTQDLHTLEVTGQKRVAQIKAHVASLEAVAPEDQVVLPEAKPLEDEATLGQCRIEGLITLEVANH |
Parental | MLGGKVHGSLARA-GKVRG-QTPKVAKQEKKKKKTGRAKRRMQYNRR-FVNVVPTFGKKKGPNANS |
MLGGKVHG.L....GK..G.QT.KVAK.E....KT..AK...QYN...FVNV.PTFGKKKGPNANS | |
Retrocopy | MLGGKVHGPLTCG<GKEKG<QTLKVAKYE--TRKTVEAKGWVQYNCA<FVNVAPTFGKKKGPNANS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 50 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 156 .75 RPM |
SRP017611_liver | 0 .00 RPM | 85 .02 RPM |