Parental gene:

TPM1, ENSCAFG00000016966

Aliases:None
Description:tropomyosin 1 (alpha) [Source:HGNC Symbol;Acc:12010]
Organism:Dog (Canis familiaris)
Coordinates:30:27636258..27664073(+)


>ENSCAFG00000016966
ATGGACGCCATCAAGAAGAAGATGCAGATGCTCAAGCTCGACAAGGAGAATGCCTTGGATCGAGCCGAGCAGGCGGAGGC
CGATAAGAAGGCGGCGGAGGACAGGAGCAAGCAGCTGGAGGAGGACATCGCGGCCAAGGAGAAGCTGCTGCGGGCGTCGG
AGGACGAGCGGGACCGGGTGCTGGAGGAGCTGCACTCGGCGGAGGACAGCCTCCTGGCCGCGGATGAGACCGCCGCCAAG
CTGGAAGATGAGCTGGTGTCGCTGCAAAAGAAACTCAAGGGCACCGAAGATGAACTGGACAAATACTCCGAGGCTCTCAA
AGATGCCCAGGAGAAGTTGGAGCTGGCGGAGAAAAAGGCCACTGACGCTGAAGCCGATGTAGCTTCTCTGAACAGACGCA
TCCAGCTGGTTGAGGAAGAGTTGGATCGTGCCCAGGAGCGACTGGCAACAGCTTTGCAGAAGCTGGAGGAGGCTGAGAAG
GCAGCGGACGAGAGCGAGAGAGGCATGAAAGTCATTGAAAGCCGAGCCCAAAAGGATGAGGAGAAAATGGAAATTCAGGA
GATCCAACTGAAAGAGGCCAAGCACATTGCTGAAGATGCCGACCGCAAGTATGAAGAGGTGGCCCGTAAGCTGGTCATCA
TTGAGAGCGACCTGGAACGCGCAGAAGAACGGGCTGAGCTCTCAGAAAGCAAATGTGCCGAGCTTGAAGAAGAATTGAAA
ACTGTGACGAACAACTTGAAGTCACTGGAGGCTCAGGCTGAGAAGTACTCGCAGAAGGAAGACAAATATGAGGAAGAGAT
CAAGGTTCTTTCTGACAAGCTGAAGGAGGCCGAGACTCGGGCTGAGTTTGCGGAGAGGTCAGTAACTAAATTGGAGAAAA
GCATTGATGACTTAGAAGAGAAAGTGGCTCATGCCAAAGAAGAAAACCTTAGTATGCATCAGATGCTGGATCAGACTTTA
CTGGAGTTAAACAACATG

Library Parental gene expression (RPM)
SRP012049_cerebellum 120 .58 RPM
SRP017611_brain 103 .37 RPM
SRP017611_kidney 141 .85 RPM
SRP017611_liver 73 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000015796 within_species_paralog 1 retrogene
retro_cfam_2107,
Canis familiaris ENSCAFG00000017311 within_species_paralog 4 retrogenes
retro_cfam_1278, retro_cfam_1678, retro_cfam_2089, retro_cfam_983,
Choloepus hoffmanni ENSCHOG00000012788 ortholog_one2one 11 retrogenes
retro_chof_1194, retro_chof_1272, retro_chof_1360, retro_chof_1789, retro_chof_1829, retro_chof_2309, retro_chof_346, retro_chof_399, retro_chof_412, retro_chof_770, retro_chof_967,
Callithrix jacchus ENSCJAG00000004355 ortholog_one2one 2 retrogenes
retro_cjac_2200, retro_cjac_691,
Macropus eugenii ENSMEUG00000014581 ortholog_one2one 2 retrogenes
retro_meug_1944, retro_meug_2161,
Pongo abelii ENSPPYG00000006534 ortholog_one2one 1 retrogene
retro_pabe_624,
Rattus norvegicus ENSRNOG00000018184 ortholog_one2one 1 retrogene
retro_rnor_734,
Ictidomys tridecemlineatus ENSSTOG00000009955 ortholog_one2many 1 retrogene
retro_itri_166,
Tursiops truncatus ENSTTRG00000003762 ortholog_one2one 1 retrogene
retro_ttru_446,
Vicugna pacos ENSVPAG00000003277 ortholog_one2one 1 retrogene
retro_vpac_424,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_2167 82.05 83.13
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Download FASTA sequences of all ENSCAFG00000016966 retrocopies