Parental gene: | SMARCE1, ENSCAFG00000016025 |
| Aliases: | None |
| Description: | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:HGNC Symbol;Acc:11109] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 9:22017956..22035370(+) |
>ENSCAFG00000016025
ATGCCCAGCACACCAGGGTTTGTGGGATACAATCCATACAGTCATCTCGCCTACAACAACTACAGGCTGGGAGGGAACCC
GGGCACCAACAGCCGGGTCACGGCATCCTCTGGTATTACGATTCCAAAACCCCCAAAGCCACCAGATAAGCCGCTGATGC
CCTACATGAGGTACAGCAGAAAGGTCTGGGACCAAGTAAAAGCTTCCAACCCTGACCTAAAGTTGTGGGAGATTGGCAAG
ATTATTGGTGGCATGTGGCGAGATCTCACTGATGAAGAAAAACAAGAATATTTAAACGAATACGAAGCAGAAAAGATAGA
GTACAATGAATCTATGAAGGCCTATCATAATTCCCCCGCATACCTTGCTTACATAAATGCGAAAAGTCGTGCAGAAGCTG
CTTTAGAGGAAGAAAGTCGACAGAGACAGTCTCGCATGGAGAAAGGAGAACCTTACATGAGCATTCAGCCTGCTGAAGAT
CCAGATGATTATGATGATGGCTTTTCAATGAAGCATACAGCCACTGCCCGTTTCCAGAGAAACCACCGCCTCATCAGTGA
AATCCTTAGTGAGAGTGTGGTGCCAGACGTTCGGTCAGTTGTCACAACAGCTAGAATGCAGGTCCTCAAACGACAGGTCC
AGTCCTTAATGGTTCATCAGCGAAAACTAGAAGCTGAACTTCTTCAGATAGAGGAGCGACACCAGGAAAAGAAGAGGAAG
TTCCTAGAAAGCACAGATTCATTTAACAATGAACTTAAAAGGTTGTGCGGTTTGAAAGTAGAAGTGGATATGGAAAAGAT
TGCCGCTGAAATTGCACAGGCAGAAGAACAGGCTCGCAAAAGGCAAGAGGAGAGGGAGAAAGAAGCAGCAGAGCAAGCTG
AACGTAGTCAGAGCAGCATGGTTCCCGAGGAAGAGCCAGCTGCTAGTAAGACCCAGGAGAAGAAGGACGACGAAAGCATC
CCTATGGAGACAGAGGAGACACACCTTGAAGAAGCAACGGAAAGCCAACAGAACGGTGAAGAAGGCACATCTACTCCTGA
GGACAAGGAGAGCGGGCAGGAGGGGGTGGACAGTATGGCCGAGGAAGGGACCAGTGATAGTAACACTGGCTCAGAGAGCA
ACAGTGCAACAGTGGAGGAGCCACCGACAGACCCCACACCAGAAGATGAGAAGAAAGAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012049_cerebellum | 32 .51 RPM |
| SRP017611_brain | 11 .04 RPM |
| SRP017611_kidney | 21 .59 RPM |
| SRP017611_liver | 7 .03 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000008727 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000013573 | possible_ortholog | 4 retrogenes | |
| Felis catus | ENSFCAG00000009646 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000011803 | possible_ortholog | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000004005 | possible_ortholog | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014660 | ortholog_one2one | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000008981 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008456 | possible_ortholog | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000010676 | possible_ortholog | 7 retrogenes | |
| Tursiops truncatus | ENSTTRG00000013885 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_1057 | 96.55 | 51.40 | Please wait, loading  |
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| 2. | retro_cfam_1131 | 94.91 | 100.00 | Please wait, loading |
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| 3. | retro_cfam_1134 | 96.18 | 100.00 | Please wait, loading |
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| 4. | retro_cfam_1300 | 90.58 | 77.86 | Please wait, loading |
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| 5. | retro_cfam_1412 | 77.18 | 53.72 | Please wait, loading |
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| 6. | retro_cfam_1803 | 96.06 | 53.72 | Please wait, loading |
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| 7. | retro_cfam_2063 | 97.20 | 100.00 | Please wait, loading |
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| 8. | retro_cfam_2127 | 90.59 | 53.72 | Please wait, loading |
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Download FASTA sequences of all ENSCAFG00000016025 retrocopies