Parental gene: | DKFZP459C0539, ENSPPYG00000008456 |
| Aliases: | None |
| Description: | DKFZP459C0539 protein [Source:RefSeq peptide;Acc:NP_001128829] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 17:48765821..48788816(+) |
>ENSPPYG00000008456
ATGTCAAAAAGACCATCTTATGCCCCACCTCCCACCCCAGCTCCTGCAACACAAATGCCCAGCACACCAGGGTTTGTGGG
ATACAATCCATACAGTCATCTCGCCTACAACAACTACAGGCTGGGAGGGAACCCGGGCACCAACAGCCGGGTCACGGCAT
CCTCTGGTATCACGATTCCAAAACCCCCAAAGCCACCAGATAAGCCGCTGATGCCCTACATGAGGTACAGCAGAAAGGTC
TGGGACCAAGTAAAGGCTTCCAACCCTGACCTAAAGTTGTGGGAGATTGGCAAGATTATTGGTGGCATGTGGCGAGATCT
CACTGATGAAGAAAAACAAGAATATTTAAACGAATACGAAGCAGAAAAGATAGAGTACAATGAATCTATGAAGGCCTATC
ATAATTCCCCCGCGTACCTTGCTTACATAAATGCAAAAAGTCGTGCAGAAGCTGCTTTAGAGGAAGAAAGTCGACAGAGA
CAATCTCGCATGGAGAAAGGAGAACCGTACATGAGCATTCAGCCTGCTGAAGATCCAGATGATTATGATGATGGCTTTTC
AATGAAGCATACAGCCACCGCGCGTTTCCAGAGAAACCACCGCCTCATCAGTGAAATTCTTAGTGAGAGTGTGGTGCCAG
ACGTTCGGTCAGTTGTCACAACAGCTAGAATGCAGGTCCTCAAACGGCAGGTCCAGTCCTTAATGGTTCATCAGCGAAAA
CTAGAAGCTGAACTTCTTCAAATAGAGGAACGGCACCAGGAGAAGAAGAGGAAATTCCTGGAAAGCACAGATTCATTTAA
CAATGAACTTAAAAGGTTGTGTGGTCTGAAAGTAGAAGTGGATATGGAAAAAATTGCAGCTGAGATTGCACAGGCAGAGG
AACAGGCCCGCAAAAGGCAGGAGGAAAGGGAGAAGGAGGCCGCAGAGCAAGCTGAGCGCAGTCAGAGCAGCATTGTTCCT
GAGGAAGAACAAGCAGCCAACAAAGGCGAGGAGAAGAAAGACGATGAGAACATTCCAATGGAGACAGAGGAGACACACCT
TGAAGAAACAACAGAGAGCCAACAGAATGGTGAAGAAGGCACATCTACTCCTGAGGACAAGGAGAGTGGGCAGGAGGGGG
TCGACAGTATGGCAGAGGAAGGAACCAGTGATAGTAACACTGGCTCGGAGAGCAACAGTGCAACAGTGGAGGAGCCACCA
ACAGATCCCATACCAGAAGATGAGAAAAAAGAATAA
ATGTCAAAAAGACCATCTTATGCCCCACCTCCCACCCCAGCTCCTGCAACACAAATGCCCAGCACACCAGGGTTTGTGGG
ATACAATCCATACAGTCATCTCGCCTACAACAACTACAGGCTGGGAGGGAACCCGGGCACCAACAGCCGGGTCACGGCAT
CCTCTGGTATCACGATTCCAAAACCCCCAAAGCCACCAGATAAGCCGCTGATGCCCTACATGAGGTACAGCAGAAAGGTC
TGGGACCAAGTAAAGGCTTCCAACCCTGACCTAAAGTTGTGGGAGATTGGCAAGATTATTGGTGGCATGTGGCGAGATCT
CACTGATGAAGAAAAACAAGAATATTTAAACGAATACGAAGCAGAAAAGATAGAGTACAATGAATCTATGAAGGCCTATC
ATAATTCCCCCGCGTACCTTGCTTACATAAATGCAAAAAGTCGTGCAGAAGCTGCTTTAGAGGAAGAAAGTCGACAGAGA
CAATCTCGCATGGAGAAAGGAGAACCGTACATGAGCATTCAGCCTGCTGAAGATCCAGATGATTATGATGATGGCTTTTC
AATGAAGCATACAGCCACCGCGCGTTTCCAGAGAAACCACCGCCTCATCAGTGAAATTCTTAGTGAGAGTGTGGTGCCAG
ACGTTCGGTCAGTTGTCACAACAGCTAGAATGCAGGTCCTCAAACGGCAGGTCCAGTCCTTAATGGTTCATCAGCGAAAA
CTAGAAGCTGAACTTCTTCAAATAGAGGAACGGCACCAGGAGAAGAAGAGGAAATTCCTGGAAAGCACAGATTCATTTAA
CAATGAACTTAAAAGGTTGTGTGGTCTGAAAGTAGAAGTGGATATGGAAAAAATTGCAGCTGAGATTGCACAGGCAGAGG
AACAGGCCCGCAAAAGGCAGGAGGAAAGGGAGAAGGAGGCCGCAGAGCAAGCTGAGCGCAGTCAGAGCAGCATTGTTCCT
GAGGAAGAACAAGCAGCCAACAAAGGCGAGGAGAAGAAAGACGATGAGAACATTCCAATGGAGACAGAGGAGACACACCT
TGAAGAAACAACAGAGAGCCAACAGAATGGTGAAGAAGGCACATCTACTCCTGAGGACAAGGAGAGTGGGCAGGAGGGGG
TCGACAGTATGGCAGAGGAAGGAACCAGTGATAGTAACACTGGCTCGGAGAGCAACAGTGCAACAGTGGAGGAGCCACCA
ACAGATCCCATACCAGAAGATGAGAAAAAAGAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 50 .65 RPM |
| SRP007412_cerebellum | 64 .81 RPM |
| SRP007412_heart | 22 .85 RPM |
| SRP007412_kidney | 52 .07 RPM |
| SRP007412_liver | 29 .32 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000016025 | possible_ortholog | 8 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000008727 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000013573 | ortholog_many2many | 4 retrogenes | |
| Felis catus | ENSFCAG00000009646 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000073584 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000011803 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000009821 | ortholog_one2many | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000004609 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000004005 | ortholog_one2one | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014660 | possible_ortholog | 4 retrogenes | |
| Mus musculus | ENSMUSG00000037935 | ortholog_one2many | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000001957 | ortholog_one2many | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000008981 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000001652 | ortholog_one2many | 7 retrogenes | |
| Ochotona princeps | ENSOPRG00000000985 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000022902 | ortholog_one2one | 5 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000011355 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000010676 | ortholog_one2many | 7 retrogenes | |
| Tupaia belangeri | ENSTBEG00000000770 | ortholog_one2many | 10 retrogenes | |
| Tursiops truncatus | ENSTTRG00000013885 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_794 | 84.50 | 99.51 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_994 | 83.54 | 99.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2973 | 79.81 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_3251 | 84.22 | 99.27 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000008456 retrocopies