RetrogeneDB ID: | retro_cfam_1131 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 24:11544649..11545828(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SMARCE1 | ||
Ensembl ID: | ENSCAFG00000016025 | ||
Aliases: | None | ||
Description: | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:HGNC Symbol;Acc:11109] |
Percent Identity: | 94.91 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MPSTPGFVGYNPYSHLAYNNYRLGGNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASN |
MPSTPGFVGYNPYSHLAYNNYRLGGNPGTNSRVTASSGI.IPKP.KPPDKPL.PYMRYSRKVWDQVKASN | |
Retrocopy | MPSTPGFVGYNPYSHLAYNNYRLGGNPGTNSRVTASSGIMIPKPSKPPDKPLIPYMRYSRKVWDQVKASN |
Parental | PDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESR |
PDLKLWEIGKIIGGMW.DLTDEEKQEYLN.YEAEKIEYNESMKA.HNSPAYLAYINAKSRAEAALEEESR | |
Retrocopy | PDLKLWEIGKIIGGMWQDLTDEEKQEYLNKYEAEKIEYNESMKA*HNSPAYLAYINAKSRAEAALEEESR |
Parental | QRQSRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLK |
Q.QSRMEKGEPY.SIQPAEDPDDY.D.FSMK.TATA.FQRNHRLISEILSESVVPDVRSVVTTARMQVLK | |
Retrocopy | QSQSRMEKGEPYLSIQPAEDPDDYGDDFSMKPTATAHFQRNHRLISEILSESVVPDVRSVVTTARMQVLK |
Parental | RQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAAEIAQAEEQARK |
RQVQSLMVHQRKLEAELLQIEERHQEK.RKFLESTDSFNNELKRLCGLKVEVD.EK.AAEIAQAEEQARK | |
Retrocopy | RQVQSLMVHQRKLEAELLQIEERHQEKMRKFLESTDSFNNELKRLCGLKVEVDTEKVAAEIAQAEEQARK |
Parental | RQEEREKEAAEQAERSQSSMVPEEEPAASKTQEKKDDESIPMETEETHLEEATESQQNGEEGTSTPEDKE |
RQEERE.EAAEQAERSQSS.VPEEEPAASKTQ.KKDDESIPMETEETHLEEATESQQNGEEGTSTPEDKE | |
Retrocopy | RQEEREREAAEQAERSQSSTVPEEEPAASKTQGKKDDESIPMETEETHLEEATESQQNGEEGTSTPEDKE |
Parental | SGQEGVDSMAEEGTSDSNTGSESNSATVEEPPTDPTPEDEKKE |
SGQEGVDSMAEEGTSDS.TGSESNSAT.EEPPTDPTPEDEKKE | |
Retrocopy | SGQEGVDSMAEEGTSDSYTGSESNSATAEEPPTDPTPEDEKKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 32 .51 RPM |
SRP017611_brain | 0 .00 RPM | 11 .04 RPM |
SRP017611_kidney | 0 .07 RPM | 21 .59 RPM |
SRP017611_liver | 0 .00 RPM | 7 .03 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000016025 | 8 retrocopies |
retro_cfam_1057, retro_cfam_1131 , retro_cfam_1134, retro_cfam_1300, retro_cfam_1412, retro_cfam_1803, retro_cfam_2063, retro_cfam_2127,
|
Choloepus hoffmanni | ENSCHOG00000008727 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000013573 | 4 retrocopies | |
Felis catus | ENSFCAG00000009646 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000011803 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000004005 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000014660 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008981 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008456 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000010676 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000013885 | 1 retrocopy |