RetrogeneDB ID: | retro_mmul_1284 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 17:23512752..23513431(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4855 | ||
Ensembl ID: | ENSMMUG00000004005 | ||
Aliases: | None | ||
Description: | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 [Source:RefSeq peptide;Acc:NP_001248235] |
Percent Identity: | 86.03 % |
Parental protein coverage: | 54.26 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQ----SLMVHQRKLEAELLQIEERHQE |
KH..TARFQRNH.LISEILS.SVVPDV.SVV.TARMQVLKRQVQ....SLMVHQ.K.EAE.LQIEERHQE | |
Retrocopy | KHPVTARFQRNHCLISEILSGSVVPDVWSVVRTARMQVLKRQVQRQV*SLMVHQ*KPEAEILQIEERHQE |
Parental | KKRKFLESTDSFNNELKRLCGLKVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQAERSQSSIVPEEEQ |
KKRKFLES.DS.NNELKRLC.LKVEVDMEKIAAEIAQAEE.A...QEEREKEAAEQAE.SQS.I.PEE.Q | |
Retrocopy | KKRKFLESIDSLNNELKRLCCLKVEVDMEKIAAEIAQAEEPAHEGQEEREKEAAEQAECSQSNILPEE*Q |
Parental | AANKGEEKKDDENIPMETEETHLEETTESQQNGEEGTSTPEDKESG-QEG-VDSMAEEGTSDSNTGSESN |
AANKGEEKKDD.NIPMETEET.LEE.TESQQNGEEGTSTPEDKESG.QEG.VDSMAEEGTSDSNTGSESN | |
Retrocopy | AANKGEEKKDDDNIPMETEETQLEEITESQQNGEEGTSTPEDKESG<QEG<VDSMAEEGTSDSNTGSESN |
Parental | SATVEEPPTDPIPEDEKKE |
S.T.EEPPTD.IPEDEKKE | |
Retrocopy | STTGEEPPTDSIPEDEKKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 36 .42 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 27 .13 RPM |
SRP007412_cerebellum | 0 .06 RPM | 36 .87 RPM |
SRP007412_heart | 0 .00 RPM | 47 .99 RPM |
SRP007412_kidney | 0 .00 RPM | 59 .86 RPM |
SRP007412_liver | 0 .00 RPM | 20 .78 RPM |
SRP007412_testis | 0 .04 RPM | 56 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1195 |
Pan troglodytes | retro_ptro_3039 |
Gorilla gorilla | retro_ggor_931 |
Pongo abelii | retro_pabe_994 |