Parental gene:

SMARCE1, ENSFCAG00000009646

Aliases:None
Description:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:HGNC Symbol;Acc:11109]
Organism:Cat (Felis catus)
Coordinates:E1:41478379..41495786(-)


>ENSFCAG00000009646
CAAACAGAAAGACCATCTTATGCCCCACCTCCCACCCCAGCTCCTGCAACACAAATGCCCAGCACACCAGGGTTTGTGGG
ATACAATCCATACAGTCATCTCGCCTACAACAACTACAGGCTGGGAGGGAACCCGGGCACCAACAGCCGGGTCACGGCCT
CCTCTGGTATTACGATTCCAAAACCCCCAAAGCCACCAGATAAGCCGCTGATGCCCTACATGAGGTACAGCAGAAAGGTC
TGGGACCAAGTAAAAGCTTCCAACCCCGACCTAAAGTTGTGGGAGATTGGCAAGATTATTGGTGGCATGTGGCGAGATCT
CACTGATGAAGAAAAACAAGAATATTTAAACGAATACGAAGCAGAAAAGATAGAGTACAATGAATCTATGAAGGCCTATC
ATAATTCCCCCGCATACCTTGCTTATATAAATGCAAAAAGTCGTGCAGAAGCTGCTTTAGAGGAAGAAAGTCGACAGAGA
CAGTCTCGCATGGAGAAAGGAGAACCTTACATGAGCATTCAGCCTGCTGAAGATCCAGATGATTATGATGATGGCTTTTC
AATGAAACATACAGCCACCGCCCGTTTCCAGAGAAACCACCGCCTCATCAGTGAAATCCTTAGTGAGAGTGTGGTGCCAG
ACGTTCGGTCAGTTGTCACAACAGCTAGAATGCAGGTCCTCAAACGACAGGTCCAGTCCTTAATGGTTCATCAGCGAAAA
CTAGAAGCTGAACTTCTTCAAATAGAGGAGAGACACCAGGAAAAGAAGAGGAAATTCCTGGAAAGCACAGATTCATTTAA
CAATGAACTTAAAAGGTTGTGCGGTTTGAAAGTGGAAGTGGATATGGAAAAAATTGCCGCTGAAATTGCACAGGCAGAGG
AACAGGCTCGCAAAAGGCAGGAGGAAAGAGAAAAAGAGGCAGCGGAGCAAGCTGAACGCAGTCAGAGCAGCATGGTTCCT
GAGGAAGAGCAAGCTGCCAGTAAGACCGAGGACAAGAAGGATGACGAGAGTGTCCCAATGGAGACAGGATCAGGGACACC
TGCAAAGGAGACACACCTTGAAGAAGCGACGGAGAGCCAACAGAATGGTGAAGAAGGCACATCTACTCCTGAGGACAAGG
AGAGCGGGCAAGAGGGGGTGGACAGTATGGCTGAGGAAGGGACCAGTGATAGTAACACTGGCTCAGAGAGCAACAGTGCA
ACCGTGGAGGAACCACCAGCAGACCCCACACCGGAAGACGAGAAGAAAAAAAAT

Library Parental gene expression (RPM)
SRP017611_brain 23 .41 RPM
SRP017611_kidney 31 .95 RPM
SRP017611_liver 17 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000016025 ortholog_one2one 8 retrogenes
retro_cfam_1057, retro_cfam_1131, retro_cfam_1134, retro_cfam_1300, retro_cfam_1412, retro_cfam_1803, retro_cfam_2063, retro_cfam_2127,
Choloepus hoffmanni ENSCHOG00000008727 ortholog_one2one 3 retrogenes
retro_chof_1245, retro_chof_482, retro_chof_573,
Callithrix jacchus ENSCJAG00000013573 possible_ortholog 4 retrogenes
retro_cjac_1107, retro_cjac_2109, retro_cjac_50, retro_cjac_854,
Gorilla gorilla ENSGGOG00000011803 possible_ortholog 2 retrogenes
retro_ggor_1020, retro_ggor_931,
Macaca mulatta ENSMMUG00000004005 possible_ortholog 3 retrogenes
retro_mmul_1284, retro_mmul_2159, retro_mmul_2286,
Mustela putorius furo ENSMPUG00000014660 ortholog_one2one 4 retrogenes
retro_mputfur_1411, retro_mputfur_1482, retro_mputfur_1499, retro_mputfur_739,
Oryctolagus cuniculus ENSOCUG00000008981 ortholog_one2many 1 retrogene
retro_ocun_59,
Pongo abelii ENSPPYG00000008456 possible_ortholog 4 retrogenes
retro_pabe_2973, retro_pabe_3251, retro_pabe_794, retro_pabe_994,
Rattus norvegicus ENSRNOG00000010676 possible_ortholog 7 retrogenes
retro_rnor_1278, retro_rnor_1311, retro_rnor_1456, retro_rnor_1507, retro_rnor_1599, retro_rnor_2383, retro_rnor_2593,
Tursiops truncatus ENSTTRG00000013885 ortholog_one2one 1 retrogene
retro_ttru_1217,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_234 68.66 50.96
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2. retro_fcat_513 63.88 54.07
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Download FASTA sequences of all ENSFCAG00000009646 retrocopies