Parental gene: | UBE2N, ENSCJAG00000002979 |
| Aliases: | None |
| Description: | ubiquitin-conjugating enzyme E2N [Source:HGNC Symbol;Acc:12492] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:83376646..83409220(-) |
>ENSCJAG00000002979
ATGGCCGGGCTGCCCCGCAGGATCATCAAGGAAACCCAGCGTTTGCTGGCAGAACCAGTTCCTGGCATCAAAGCAGAACC
AGATGAGAGCAACGCCCGTTATTTTCATGTGGTCATTGCTGGCCCTCAGGATTCCCCCTTTGAGGGAGGGACTTTTAAAC
TTGAACTATTCCTTCCAGAAGAATACCCAATGGCAGCCCCTAAAGTACGTTTCATGACCAAAATTTATCATCCTAATGTA
GACAAGTTGGGAAGAATATGTTTAGATATTTTGAAAGATAAGTGGTCCCCAGCACTGCAGATCCGCACAGTTCTGCTATC
GATCCAGGCCTTGTTAAGTGCTCCTAATCCAGATGATCCATTAGCAAATGATGTAGCGGAGCAGTGGAAGACCAACGAAG
CCCAAGCCATAGAAACAGCTAGAGCATGGACTAGGCTATATGCCATGAATAATATTTAA
ATGGCCGGGCTGCCCCGCAGGATCATCAAGGAAACCCAGCGTTTGCTGGCAGAACCAGTTCCTGGCATCAAAGCAGAACC
AGATGAGAGCAACGCCCGTTATTTTCATGTGGTCATTGCTGGCCCTCAGGATTCCCCCTTTGAGGGAGGGACTTTTAAAC
TTGAACTATTCCTTCCAGAAGAATACCCAATGGCAGCCCCTAAAGTACGTTTCATGACCAAAATTTATCATCCTAATGTA
GACAAGTTGGGAAGAATATGTTTAGATATTTTGAAAGATAAGTGGTCCCCAGCACTGCAGATCCGCACAGTTCTGCTATC
GATCCAGGCCTTGTTAAGTGCTCCTAATCCAGATGATCCATTAGCAAATGATGTAGCGGAGCAGTGGAAGACCAACGAAG
CCCAAGCCATAGAAACAGCTAGAGCATGGACTAGGCTATATGCCATGAATAATATTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 16 .13 RPM |
| SRP051959_skeletal_muscle | 17 .73 RPM |
| SRP051959_lymph_node | 17 .33 RPM |
| SRP051959_lung | 14 .98 RPM |
| SRP051959_liver | 11 .74 RPM |
| SRP051959_kidney | 13 .56 RPM |
| SRP051959_heart | 14 .07 RPM |
| SRP051959_colon | 19 .61 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009833 | possible_ortholog | 1 retrogene | |
| Bos taurus | ENSBTAG00000021767 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000006177 | possible_ortholog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000008581 | possible_ortholog | 5 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000018952 | possible_ortholog | 9 retrogenes | |
| Echinops telfairi | ENSETEG00000001882 | ortholog_one2one | 5 retrogenes | |
| Felis catus | ENSFCAG00000004260 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000177889 | ortholog_one2one | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000028985 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000002944 | possible_ortholog | 7 retrogenes | |
| Microcebus murinus | ENSMICG00000014081 | possible_ortholog | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000009982 | possible_ortholog | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000020634 | possible_ortholog | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000009451 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000074781 | ortholog_one2one | 6 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005695 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000011287 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000034461 | possible_ortholog | 7 retrogenes | |
| Pongo abelii | ENSPPYG00000004832 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000005297 | ortholog_one2one | 3 retrogenes | |
| Sorex araneus | ENSSARG00000005945 | possible_ortholog | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000007776 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000000908 | ortholog_one2one | 4 retrogenes | |
| Tupaia belangeri | ENSTBEG00000012497 | possible_ortholog | 10 retrogenes | |
| Tarsius syrichta | ENSTSYG00000008800 | possible_ortholog | 5 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003311 | possible_ortholog | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_141 | 94.74 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_425 | 85.53 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2121 | 83.64 | 72.37 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3142 | 97.37 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_3148 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_3216 | 98.03 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_3241 | 90.79 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_3329 | 91.45 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000002979 retrocopies