Parental gene:

UBE2N, ENSPTRG00000005297

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:12:93621021..93654920(-)


>ENSPTRG00000005297
ATGGCCGGGCTGCCCCGCAGGATCATCAAGGAAACCCAGCGTTTGCTGGCAGAACCAGTTCCTGGCATCAAAGCCGAACC
AGATGAGAGCAACGCCCGTTATTTTCATGTGGTCATTGCTGGCCCTCAGGATTCCCCCTTTGAGGGAGGGACTTTTAAAC
TTGAACTATTCCTTCCAGAAGAATACCCAATGGCAGCCCCTAAAGTACGTTTCATGACCAAAATTTATCATCCTAATGTA
GACAAGTTGGGAAGAATATGTTTAGATATTTTGAAAGATAAGTGGTCCCCAGCACTGCAGATCCGCACAGTTCTGCTATC
GATCCAGGCCTTGTTAAGTGCTCCCAATCCAGATGATCCATTAGCAAATGATGTAGCGGAGCAGTGGAAGACCAACGAAG
CCCAAGCCATAGAAACAGCTAGAGCATGGACTAGGCTATATGCCATGAATAATATTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 63 .62 RPM
SRP007412_cerebellum 40 .76 RPM
SRP007412_heart 23 .81 RPM
SRP007412_kidney 28 .56 RPM
SRP007412_liver 18 .04 RPM
SRP007412_testis 149 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009833 possible_ortholog 1 retrogene
retro_amel_507,
Bos taurus ENSBTAG00000021767 ortholog_one2one 2 retrogenes
retro_btau_1173, retro_btau_1614,
Canis familiaris ENSCAFG00000006177 possible_ortholog 1 retrogene
retro_cfam_196,
Callithrix jacchus ENSCJAG00000002979 ortholog_one2one 8 retrogenes
retro_cjac_141, retro_cjac_2121, retro_cjac_3142, retro_cjac_3148, retro_cjac_3216, retro_cjac_3241, retro_cjac_3329, retro_cjac_425,
Cavia porcellus ENSCPOG00000008581 possible_ortholog 5 retrogenes
retro_cpor_1548, retro_cpor_230, retro_cpor_24, retro_cpor_655, retro_cpor_750,
Dasypus novemcinctus ENSDNOG00000018952 possible_ortholog 9 retrogenes
retro_dnov_1002, retro_dnov_1066, retro_dnov_1107, retro_dnov_1185, retro_dnov_1487, retro_dnov_1977, retro_dnov_2598, retro_dnov_277, retro_dnov_492,
Echinops telfairi ENSETEG00000001882 ortholog_one2one 5 retrogenes
retro_etel_1008, retro_etel_1417, retro_etel_1593, retro_etel_1661, retro_etel_2136,
Felis catus ENSFCAG00000004260 possible_ortholog 2 retrogenes
retro_fcat_1477, retro_fcat_1598,
Homo sapiens ENSG00000177889 ortholog_one2one 3 retrogenes
retro_hsap_1392, retro_hsap_17, retro_hsap_3124,
Loxodonta africana ENSLAFG00000028985 possible_ortholog 1 retrogene
retro_lafr_57,
Macropus eugenii ENSMEUG00000002944 possible_ortholog 7 retrogenes
retro_meug_1236, retro_meug_1287, retro_meug_1453, retro_meug_1473, retro_meug_162, retro_meug_2009, retro_meug_31,
Microcebus murinus ENSMICG00000014081 possible_ortholog 4 retrogenes
retro_mmur_1351, retro_mmur_220, retro_mmur_267, retro_mmur_611,
Myotis lucifugus ENSMLUG00000009982 possible_ortholog 2 retrogenes
retro_mluc_2166, retro_mluc_453,
Macaca mulatta ENSMMUG00000020634 possible_ortholog 3 retrogenes
retro_mmul_1587, retro_mmul_234, retro_mmul_72,
Monodelphis domestica ENSMODG00000009451 ortholog_one2one 2 retrogenes
retro_mdom_133, retro_mdom_1485,
Mus musculus ENSMUSG00000074781 ortholog_one2one 6 retrogenes
retro_mmus_1031, retro_mmus_2656, retro_mmus_3031, retro_mmus_3294, retro_mmus_3510, retro_mmus_524,
Nomascus leucogenys ENSNLEG00000005695 ortholog_one2one 2 retrogenes
retro_nleu_1078, retro_nleu_2279,
Oryctolagus cuniculus ENSOCUG00000011287 possible_ortholog 1 retrogene
retro_ocun_100,
Otolemur garnettii ENSOGAG00000034461 possible_ortholog 7 retrogenes
retro_ogar_1502, retro_ogar_2178, retro_ogar_406, retro_ogar_408, retro_ogar_566, retro_ogar_584, retro_ogar_732,
Pongo abelii ENSPPYG00000004832 ortholog_one2one 4 retrogenes
retro_pabe_113, retro_pabe_1152, retro_pabe_2580, retro_pabe_3326,
Sorex araneus ENSSARG00000005945 possible_ortholog 3 retrogenes
retro_sara_174, retro_sara_438, retro_sara_695,
Sarcophilus harrisii ENSSHAG00000007776 possible_ortholog 1 retrogene
retro_shar_105,
Sus scrofa ENSSSCG00000000908 ortholog_one2one 4 retrogenes
retro_sscr_101, retro_sscr_369, retro_sscr_698, retro_sscr_699,
Tupaia belangeri ENSTBEG00000012497 possible_ortholog 10 retrogenes
retro_tbel_108, retro_tbel_1208, retro_tbel_1235, retro_tbel_1727, retro_tbel_2393, retro_tbel_2732, retro_tbel_275, retro_tbel_3151, retro_tbel_4655, retro_tbel_849,
Tarsius syrichta ENSTSYG00000008800 possible_ortholog 5 retrogenes
retro_tsyr_1476, retro_tsyr_1754, retro_tsyr_207, retro_tsyr_348, retro_tsyr_5,
Tursiops truncatus ENSTTRG00000003311 possible_ortholog 3 retrogenes
retro_ttru_1235, retro_ttru_286, retro_ttru_702,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_956 88.31 100.00
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2. retro_ptro_2112 86.27 100.00
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3. retro_ptro_3253 96.08 100.00
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Download FASTA sequences of all ENSPTRG00000005297 retrocopies