RetrogeneDB ID: | retro_pabe_113 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:143678057..143678516(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000020793 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2N | ||
Ensembl ID: | ENSPPYG00000004832 | ||
Aliases: | None | ||
Description: | Ubiquitin-conjugating enzyme E2 N [Source:UniProtKB/Swiss-Prot;Acc:Q5R7J6] |
Percent Identity: | 90.79 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVR |
M..LP.RIIKETQRLLAEPVPGIKAEPDESN..YFHVVIAG.QDSPFEGGTFKLEL.L.EEYPMAA..VR | |
Retrocopy | MSRLPHRIIKETQRLLAEPVPGIKAEPDESNSCYFHVVIAGLQDSPFEGGTFKLELLLAEEYPMAARQVR |
Parental | FMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETA |
FMTKIYHPNVDKL.R.CLDILK.KWSPALQIRTVLLSIQALLSA.NPDDPLANDVAEQWKTNEAQAIETA | |
Retrocopy | FMTKIYHPNVDKLERVCLDILKNKWSPALQIRTVLLSIQALLSALNPDDPLANDVAEQWKTNEAQAIETA |
Parental | RAWTRLYAMNNI |
RAWTRLYAMNNI | |
Retrocopy | RAWTRLYAMNNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 88 .24 RPM |
SRP007412_cerebellum | 0 .00 RPM | 90 .59 RPM |
SRP007412_heart | 0 .00 RPM | 27 .97 RPM |
SRP007412_kidney | 0 .00 RPM | 41 .90 RPM |
SRP007412_liver | 0 .00 RPM | 28 .64 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_17 |
Macaca mulatta | retro_mmul_72 |