Parental gene:

CWC15, ENSCJAG00000004188

Aliases:None
Description:CWC15 spliceosome-associated protein homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26939]
Organism:Marmoset (Callithrix jacchus)
Coordinates:11:42795071..42806237(+)


>ENSCJAG00000004188
ATGACAACTGCAGCCAGGCCAACCTTTGAACCTGCAAGGGGTGGAAGAGGAAAAGGAGAAGGTGATTTGAGCCAACTTTC
AAAGCAGTATTCAAGCAGAGACCTACCTTCTCATACAAAGATAAAATACAGACAAACTACTCAGGATGCCCCTGAAGAGG
TTCGTAACCGTGACTTCAGGAGAGAGTTGGAAGAAAGAGAGAGAGCTGCTGCAAGAGAGAAAAATAGGGATCGTCCAACC
CGAGAACATACAACCTCCTCTTCAGTGTCAAAAAAGCCACGGTTAGACCAGATTCCTGCTGCCAATCTTGATGCAGATGA
CCCTCTAACAGATGAGGAAGATGAAGATTTTGAAGAAGAAAGTGACGATGATGATACTGCAGCTCTTCTTGCAGAACTGG
AAAAAATTAAAAAAGAAAGAGCTGAAGAGCAGGCCAGGAAGGAACAAGAACAAAAAGCTGAAGAAGAGAGGATTCGTATG
GAAAACATTCTGAGCGGAAACCCTCTCCTTAATCTCACTGGCCCATCCCAGCCTCAGGCCAACTTCAAAGTTAAAAGAAG
GTGGGATGATGATGTTGTCTTCAAGAACTGTGCAAAAGGTGTAGATGACCAGAAGAAAGACAAAAGATTTGTAAATGACA
CATTGCGATCTGAATTTCACAAAAAGTTTATGGAGAAATATATTAAGTAG

Library Parental gene expression (RPM)
SRP051959_spleen 47 .14 RPM
SRP051959_skeletal_muscle 92 .86 RPM
SRP051959_lymph_node 37 .56 RPM
SRP051959_lung 42 .51 RPM
SRP051959_liver 39 .34 RPM
SRP051959_kidney 40 .82 RPM
SRP051959_heart 46 .74 RPM
SRP051959_colon 21 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007913 possible_ortholog 1 retrogene
retro_btau_703,
Canis familiaris ENSCAFG00000004134 possible_ortholog 6 retrogenes
retro_cfam_1329, retro_cfam_2123, retro_cfam_503, retro_cfam_537, retro_cfam_61, retro_cfam_805,
Cavia porcellus ENSCPOG00000006249 ortholog_one2one 1 retrogene
retro_cpor_708,
Echinops telfairi ENSETEG00000006649 ortholog_one2many 1 retrogene
retro_etel_647,
Felis catus ENSFCAG00000007826 possible_ortholog 1 retrogene
retro_fcat_1416,
Myotis lucifugus ENSMLUG00000002032 possible_ortholog 3 retrogenes
retro_mluc_102, retro_mluc_2143, retro_mluc_2478,
Mus musculus ENSMUSG00000004096 ortholog_one2one 2 retrogenes
retro_mmus_2482, retro_mmus_593,
Ornithorhynchus anatinus ENSOANG00000010404 ortholog_one2many 1 retrogene
retro_oana_5,
Otolemur garnettii ENSOGAG00000001686 ortholog_one2one 2 retrogenes
retro_ogar_2476, retro_ogar_456,
Rattus norvegicus ENSRNOG00000008490 ortholog_one2many 3 retrogenes
retro_rnor_2452, retro_rnor_251, retro_rnor_476,
Sarcophilus harrisii ENSSHAG00000016534 ortholog_one2many 5 retrogenes
retro_shar_26, retro_shar_333, retro_shar_447, retro_shar_596, retro_shar_768,
Tarsius syrichta ENSTSYG00000000407 ortholog_one2many 1 retrogene
retro_tsyr_1585,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2802 78.35 99.56
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Download FASTA sequences of all ENSCJAG00000004188 retrocopies