Parental gene:

ENSCJAG00000004474

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:116430621..116454075(+)


>ENSCJAG00000004474
ATGACAGATTACGGCGAGGAGCAGCGCAACGAGCTGGAGGCTCTGGAGTCCATCTACCCTGACTCCTTCACAGTATTATC
AGAAAGTCCACCCAGCTTCACCATTACTGTGACATCTGAGGCTGGAGAATATGATGAAACTGTCCAGACTACCCTCAAGT
TTACATACAGTGAAAAATACCCAGATGAAGCTCCCCTTTATGAAATATTCTCTCAGGAAAATCTAGAAGATAATGATATC
TCAGACATTTTAAAATTACTAGCGTTACAGGCTGAAGAAAATCTTGGTATGGTGATGATCTTTACTCTAGTGACAGCTGT
GCAAGAAAAATTAAACGAAATAGTAGATCAGATAAATAAAACTCATGCAAGTAAGACCAAGAATAAGAAAAAAAATGGAC
TACTTCAAATTTCTAAGCAATTATTCCATGGCACTCCAGTTACAATTGAGAATTTCTTAAATTGGAAGGCCAAGTTTGAT
GCAGAACTCTTGGAAATTAAAAAGAAAAGGATGAAAGAAGAAGAACAAGCAGGAAAAAATAAATTAAGTGGGAAACAACT
ATTTGAAACAGATCATAATCTTGACACATCTGATATCCAGTTCTTGGAGGATGCTGGAAACAATGTGGAGGTAGATGAGT
CTTTGTTCCAAGAAATGGATGACTTGGAGTTAGAGGATGATGAAGATGATCCAGACTACACTCCTGCTGACCCAGAGAGT
GACTCAGCTGATTAA

Library Parental gene expression (RPM)
SRP051959_spleen 13 .21 RPM
SRP051959_skeletal_muscle 15 .94 RPM
SRP051959_lymph_node 11 .46 RPM
SRP051959_lung 10 .79 RPM
SRP051959_liver 9 .10 RPM
SRP051959_kidney 12 .38 RPM
SRP051959_heart 12 .65 RPM
SRP051959_colon 10 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005692 ortholog_one2many 1 retrogene
retro_amel_991,
Bos taurus ENSBTAG00000009689 ortholog_one2many 1 retrogene
retro_btau_1004,
Dasypus novemcinctus ENSDNOG00000007516 ortholog_one2many 1 retrogene
retro_dnov_2467,
Equus caballus ENSECAG00000006587 ortholog_one2many 2 retrogenes
retro_ecab_216, retro_ecab_277,
Echinops telfairi ENSETEG00000019085 ortholog_one2many 3 retrogenes
retro_etel_140, retro_etel_1992, retro_etel_423,
Loxodonta africana ENSLAFG00000008170 ortholog_many2many 1 retrogene
retro_lafr_813,
Monodelphis domestica ENSMODG00000017837 ortholog_one2many 1 retrogene
retro_mdom_1686,
Oryctolagus cuniculus ENSOCUG00000013592 ortholog_one2many 1 retrogene
retro_ocun_691,
Procavia capensis ENSPCAG00000005016 ortholog_one2many 1 retrogene
retro_pcap_114,
Ictidomys tridecemlineatus ENSSTOG00000020231 ortholog_one2one 2 retrogenes
retro_itri_121, retro_itri_365,
Tupaia belangeri ENSTBEG00000002543 possible_ortholog 2 retrogenes
retro_tbel_2986, retro_tbel_4366,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1622 66.05 88.43
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Download FASTA sequences of all ENSCJAG00000004474 retrocopies