RetrogeneDB ID: | retro_etel_423 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_7069:81862..82330(-) | ||
Located in intron of: | ENSETEG00000009362 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RWDD1 | ||
Ensembl ID: | ENSETEG00000019085 | ||
Aliases: | None | ||
Description: | RWD domain containing 1 [Source:HGNC Symbol;Acc:20993] |
Percent Identity: | 52.47 % |
Parental protein coverage: | 65.15 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | EQRNELEALESIYPDSFTVLSERPSSFTITVTSEAGENNKTVQTTL-KFTYSEKYPDDAPLYEIFSQENL |
E.R.....L.SI..DSFTVLSE...S...TVTS.......T.QTTL.KFT.SEKYPDDAPL..I.SQ.NL | |
Retrocopy | EDRLQHKELKSIHSDSFTVLSETRPSLPTTVTSDV---TNTAQTTL>KFTCSEKYPDDAPL*QILSQGNL |
Parental | AENDVADILKLLALQAEENLGMVMIFTLVSAVQEKLNEIVDQIKSRR---EEEKKQKEKEAEEAEKQLFH |
A.N.VAD.LK......EENL.MVMIF....A...K.N........RR....E....K............. | |
Retrocopy | ADNNVADVLKIISI-TEENLVMVMIFSISCARKTK*NSSSNKKWKRRN*QKEAEAEKQLFHGTLXXXXXX |
Parental | GTP-VTIENFLSWKAKFDAELS |
GTP.VTIENFLSWKAKFDAELS | |
Retrocopy | GTP<VTIENFLSWKAKFDAELS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005692 | 1 retrocopy | |
Bos taurus | ENSBTAG00000009689 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004474 | 1 retrocopy | |
Equus caballus | ENSECAG00000006587 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000019085 | 3 retrocopies |
retro_etel_140, retro_etel_1992, retro_etel_423 ,
|
Loxodonta africana | ENSLAFG00000008170 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017837 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013592 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000005016 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020231 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000022124 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002543 | 2 retrocopies |