Parental gene:

ENSSTOG00000020231

Aliases:None
Description:None
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393634.1:1118019..1136870(+)


>ENSSTOG00000020231
ATGACAGATTACGGCGAGGAGCAACGCAATGAGCTGGAGGCTCTCGAGTCCATCTACCCCGATTCCTTCACAGTATTATC
GGAAAATCCACCCAGCTTCACCATTACTGTGACATCTGAGGCCGGAGAAAATGATGAAAGTAAGCTACTTTCTATTTTTC
TAAGAAGTGCTGAAGAAAATCTTGGTATGGTGATGATCTTTACTCTAGTGACAGCTGTGCAAGAAAAATTAAATGAAATA
GTAGATCAGATAAAAACTAGAAGAGAGGAAGAAAAGAAACAAAAAGAAAGAGAAGCAGAAGAAGCAGAAAAGCAACTATT
CCATGGCACTCCTGTTACAATAGAGAATTTCTTAAGTTGGAAGGCCAAGTTTGATGCAGAACTTTTGGAAATTAAAAAGA
AACGGATGAAAGAAGAAGAGCAAGCAGGAAAAAATAAATTGAGTGGGAAACAGCTATTTGAAACAGATCATAATCTTGAC
ACATCTGATATCCAGTTCTTGGAGGATGCTGGAAACAATGTGGAGGTAGATGAGTCTTTGTTCCAGGAAATGGATGACTT
AGAGCTGGAGGATGATGAAGATGACCCAGACTACAATCCTGCTGACCCAGGGAGTGACTCAGCAGACTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005692 ortholog_one2many 1 retrogene
retro_amel_991,
Bos taurus ENSBTAG00000009689 ortholog_one2many 1 retrogene
retro_btau_1004,
Callithrix jacchus ENSCJAG00000004474 ortholog_one2one 1 retrogene
retro_cjac_1622,
Dasypus novemcinctus ENSDNOG00000007516 ortholog_one2many 1 retrogene
retro_dnov_2467,
Equus caballus ENSECAG00000006587 ortholog_one2many 2 retrogenes
retro_ecab_216, retro_ecab_277,
Echinops telfairi ENSETEG00000019085 ortholog_one2many 3 retrogenes
retro_etel_140, retro_etel_1992, retro_etel_423,
Loxodonta africana ENSLAFG00000008170 ortholog_many2many 1 retrogene
retro_lafr_813,
Monodelphis domestica ENSMODG00000017837 ortholog_one2many 1 retrogene
retro_mdom_1686,
Oryctolagus cuniculus ENSOCUG00000013592 ortholog_one2many 1 retrogene
retro_ocun_691,
Procavia capensis ENSPCAG00000005016 ortholog_one2many 1 retrogene
retro_pcap_114,
Ictidomys tridecemlineatus ENSSTOG00000022124 within_species_paralog 1 retrogene
retro_itri_596,
Tupaia belangeri ENSTBEG00000002543 possible_ortholog 2 retrogenes
retro_tbel_2986, retro_tbel_4366,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_121 88.19 68.90
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2. retro_itri_365 57.76 55.50
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Download FASTA sequences of all ENSSTOG00000020231 retrocopies