Parental gene:

ENSCJAG00000003731

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:17:50707408..50745283(+)


>ENSCJAG00000003731
ATGGCTAATCGAGGTGCAACAAGACCCAACGGGCCAAATACTGGAAATAAAATATGCCAGTTCAAACTAGTACTTCTGGG
AGAGTCTGCTGTTGGCAAATCAAGCCTAGTGCTTCGTTTTGTGAAAGGCCAGTTTCATGAATTTCAAGAGAGTACCATTG
GAGCTGCTTTTCTAACCCAAACTGTATGTCTTGATGACACTACAGTAAAGTTTGAAATATGGGATACAGCTGGTCAAGAA
CGATACCATAGCCTAGCACCAATGTACTACAGAGGAGCACAAGCAGCCATAGTTGTATATGATATCACAAATGAGGAGTC
CTTTGCAAGAGCAAAAAATTGGGTTAAAGAACTTCAGAGGCAAGCAAGTCCCAACATTGTAATAGCTTTATCAGGAAACA
AGGCTGACCTAGCAAATAAAAGAGCAGTAGATTTCCAGGAAGCGCAGTCCTATGCAGATGACAATAGTTTATTATTCATG
GAGACATCAGCTAAAACATCAATGAATGTAAATGAAATATTCATGGCAATAGCTAAAAAATTGCCAAAGAATGAACCACA
AAATCCAGGAGCAAATTCCGCCAGAGGAAGAGGAGTAGACCTTACTGAACCCACACAACCAACCAGGAGTCAGTGTTGTA
GTAACTAA

Library Parental gene expression (RPM)
SRP051959_spleen 26 .13 RPM
SRP051959_skeletal_muscle 17 .23 RPM
SRP051959_lymph_node 22 .92 RPM
SRP051959_lung 36 .33 RPM
SRP051959_liver 19 .58 RPM
SRP051959_kidney 20 .26 RPM
SRP051959_heart 23 .56 RPM
SRP051959_colon 27 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000954 ortholog_one2many 1 retrogene
retro_amel_958,
Bos taurus ENSBTAG00000046385 ortholog_one2many 1 retrogene
retro_btau_300,
Callithrix jacchus ENSCJAG00000000472 within_species_paralog 2 retrogenes
retro_cjac_189, retro_cjac_1948,
Callithrix jacchus ENSCJAG00000004529 within_species_paralog 2 retrogenes
retro_cjac_1178, retro_cjac_1179,
Callithrix jacchus ENSCJAG00000007527 within_species_paralog 2 retrogenes
retro_cjac_1215, retro_cjac_1879,
Callithrix jacchus ENSCJAG00000019039 within_species_paralog 2 retrogenes
retro_cjac_1715, retro_cjac_842,
Cavia porcellus ENSCPOG00000005322 ortholog_one2many 2 retrogenes
retro_cpor_1213, retro_cpor_219,
Dipodomys ordii ENSDORG00000012429 ortholog_one2many 1 retrogene
retro_dord_288,
Felis catus ENSFCAG00000004455 ortholog_one2many 2 retrogenes
retro_fcat_1349, retro_fcat_984,
Homo sapiens ENSG00000144566 ortholog_one2many 1 retrogene
retro_hsap_1074,
Gorilla gorilla ENSGGOG00000015981 ortholog_one2many 1 retrogene
retro_ggor_848,
Loxodonta africana ENSLAFG00000008321 ortholog_one2many 1 retrogene
retro_lafr_267,
Macaca mulatta ENSMMUG00000006992 ortholog_many2many 2 retrogenes
retro_mmul_227, retro_mmul_839,
Monodelphis domestica ENSMODG00000014793 ortholog_one2many 2 retrogenes
retro_mdom_1219, retro_mdom_1993,
Mus musculus ENSMUSG00000017831 ortholog_one2many 1 retrogene
retro_mmus_1645,
Nomascus leucogenys ENSNLEG00000003434 ortholog_one2many 1 retrogene
retro_nleu_2466,
Oryctolagus cuniculus ENSOCUG00000012200 ortholog_one2many 1 retrogene
retro_ocun_1034,
Pongo abelii ENSPPYG00000014074 ortholog_one2many 2 retrogenes
retro_pabe_3094, retro_pabe_894,
Pan troglodytes ENSPTRG00000014682 ortholog_one2many 1 retrogene
retro_ptro_731,
Ictidomys tridecemlineatus ENSSTOG00000026229 ortholog_one2many 1 retrogene
retro_itri_398,
Tarsius syrichta ENSTSYG00000007642 ortholog_one2many 3 retrogenes
retro_tsyr_1544, retro_tsyr_315, retro_tsyr_946,
Tursiops truncatus ENSTTRG00000001374 ortholog_one2many 1 retrogene
retro_ttru_949,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3268 82.10 74.88
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Download FASTA sequences of all ENSCJAG00000003731 retrocopies