Parental gene:

RAB22A, ENSCJAG00000019039

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:52302065..52357153(+)


>ENSCJAG00000019039
CTCATTCTCTTTCAGGATACAGGTGTAGGTAAATCGAGTATTGTGTGGCGGTTTGTGGAAGACAGTTTTGATCCAAACAT
CAATCCAACAATAGGGGCATCTTTTATGACCAAGACTGTCCAGTACCAAAATGAGCTACATAAATTCCTAATCTGGGATA
CAGCTGGACAAGAACGATTTCGTGCCTTAGCACCAATGTACTATCGAGGGTCGGCCGCAGCTATAATCGTTTATGATATC
ACAAAAGAAGAGACATTTTCAACATTAAAGAATTGGGTGAAAGAGCTTCGACAGCATGGCCCACCTAATATTGTAGTTGC
CATTGCAGGAAATAAGTGTGATCTTATTGATGTAAGAGAAGTCATGGAGAGAGATGCAAAGGACTACGCCGACTCTATTC
ATGCAATTTTTGTAGAGACCAGCGCAAAAAACGCGATAAACATAAATGAACTCTTTATAGAAATTAGTCGAAGAATTCCA
TCCACTGACGCCAACCCGCCATCTGGTGGTAAGGGCTTCAAACTCCGAAGGCAGCCTTCAGAGCCAAAGCGGAGCTGCTG
TTGA

Library Parental gene expression (RPM)
SRP051959_colon 11 .56 RPM
SRP051959_heart 11 .54 RPM
SRP051959_kidney 11 .87 RPM
SRP051959_liver 8 .38 RPM
SRP051959_lung 13 .57 RPM
SRP051959_lymph_node 13 .84 RPM
SRP051959_skeletal_muscle 10 .83 RPM
SRP051959_spleen 13 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012646 ortholog_one2one 1 retrogene
retro_amel_617,
Canis familiaris ENSCAFG00000012101 ortholog_one2one 1 retrogene
retro_cfam_501,
Callithrix jacchus ENSCJAG00000000472 within_species_paralog 2 retrogenes
retro_cjac_189, retro_cjac_1948,
Callithrix jacchus ENSCJAG00000003731 within_species_paralog 1 retrogene
retro_cjac_3268,
Callithrix jacchus ENSCJAG00000004529 within_species_paralog 2 retrogenes
retro_cjac_1178, retro_cjac_1179,
Callithrix jacchus ENSCJAG00000007527 within_species_paralog 2 retrogenes
retro_cjac_1215, retro_cjac_1879,
Microcebus murinus ENSMICG00000008382 ortholog_one2one 1 retrogene
retro_mmur_1546,
Oryctolagus cuniculus ENSOCUG00000004414 ortholog_one2one 1 retrogene
retro_ocun_554,
Otolemur garnettii ENSOGAG00000015779 ortholog_one2one 1 retrogene
retro_ogar_2851,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_842 84.71 83.42
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2. retro_cjac_1715 87.36 92.51
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Download FASTA sequences of all ENSCJAG00000019039 retrocopies