Parental gene:

ENSCJAG00000000472

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:113823934..113854987(-)


>ENSCJAG00000000472
ATGGCGGGTCGGGGAGGCACAGCACGACCCAATGGGCCAGCCTCTGGAAACAAGATCTGTCAGTTCAAGCTGGTTCTGCT
GGGGGAGTCTGCGGTGGGCAAATCCAGCCTTGTCCTCCGCTTCGTCAAGGGACAGTTTCACGAGTACCAAGAGAGCACAA
TCGGAGCGGCCTTCCTCACACAGACCGTCTGCCTGGACGACACAACAGTCAAGTTTGAGATCTGGGACACAGCTGGACAG
GAGCGGTATCACAGCCTGGCCCCCATGTACTATCGGGGGGCCCAGGCTGCCATCGTGGTCTATGACATCACCAACACAGA
TACATTTGCACGGGCCAAGAACTGGGTGAAGGAGCTACAGAGGCAGGCCAGCCCCAACATCGTCATTGCACTTGCGGGTA
ACAAGGCAGACCTGGCCAGCAAGAGAGCCGTGGAATTCCAGGNAGCACAAGCCTATGCAGACGACAATAGTTTGCTGTTT
ATGGAGACCTCAGCAAAGACTGCCATGAACGTGAATGAAATTTTCATGGCATTAGCTAAGAAGCTTCCCAAGAACGAGCC
CCAGAATGCAGCTGGTGCTCCAGGCCGAAACCGAGGTGTGGACCTCCAGGAGAGCAACCCAGCCAGCCGGAGCCAGTGCT
GCAGCAACTGA

Library Parental gene expression (RPM)
SRP051959_colon 22 .41 RPM
SRP051959_heart 13 .19 RPM
SRP051959_kidney 31 .28 RPM
SRP051959_liver 26 .27 RPM
SRP051959_lung 26 .78 RPM
SRP051959_lymph_node 19 .68 RPM
SRP051959_skeletal_muscle 16 .14 RPM
SRP051959_spleen 33 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006003 possible_ortholog 1 retrogene
retro_amel_543,
Callithrix jacchus ENSCJAG00000003731 within_species_paralog 1 retrogene
retro_cjac_3268,
Callithrix jacchus ENSCJAG00000004529 within_species_paralog 2 retrogenes
retro_cjac_1178, retro_cjac_1179,
Callithrix jacchus ENSCJAG00000007527 within_species_paralog 2 retrogenes
retro_cjac_1215, retro_cjac_1879,
Callithrix jacchus ENSCJAG00000019039 within_species_paralog 2 retrogenes
retro_cjac_1715, retro_cjac_842,
Cavia porcellus ENSCPOG00000011190 possible_ortholog 2 retrogenes
retro_cpor_333, retro_cpor_473,
Dipodomys ordii ENSDORG00000006819 ortholog_one2one 1 retrogene
retro_dord_428,
Gorilla gorilla ENSGGOG00000005472 possible_ortholog 1 retrogene
retro_ggor_2182,
Macropus eugenii ENSMEUG00000005614 ortholog_one2many 1 retrogene
retro_meug_2118,
Macaca mulatta ENSMMUG00000014761 possible_ortholog 1 retrogene
retro_mmul_2022,
Monodelphis domestica ENSMODG00000014792 ortholog_one2many 1 retrogene
retro_mdom_1399,
Otolemur garnettii ENSOGAG00000009456 possible_ortholog 2 retrogenes
retro_ogar_2175, retro_ogar_985,
Pongo abelii ENSPPYG00000008398 possible_ortholog 1 retrogene
retro_pabe_2664,
Pan troglodytes ENSPTRG00000009194 possible_ortholog 1 retrogene
retro_ptro_2237,
Rattus norvegicus ENSRNOG00000018568 ortholog_one2one 2 retrogenes
retro_rnor_393, retro_rnor_73,
Tupaia belangeri ENSTBEG00000007092 possible_ortholog 1 retrogene
retro_tbel_4668,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_189 90.34 95.83
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cjac_1948 78.14 84.26
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000000472 retrocopies