Parental gene: | ENSCJAG00000000472 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 5:113823934..113854987(-) |
>ENSCJAG00000000472
ATGGCGGGTCGGGGAGGCACAGCACGACCCAATGGGCCAGCCTCTGGAAACAAGATCTGTCAGTTCAAGCTGGTTCTGCT
GGGGGAGTCTGCGGTGGGCAAATCCAGCCTTGTCCTCCGCTTCGTCAAGGGACAGTTTCACGAGTACCAAGAGAGCACAA
TCGGAGCGGCCTTCCTCACACAGACCGTCTGCCTGGACGACACAACAGTCAAGTTTGAGATCTGGGACACAGCTGGACAG
GAGCGGTATCACAGCCTGGCCCCCATGTACTATCGGGGGGCCCAGGCTGCCATCGTGGTCTATGACATCACCAACACAGA
TACATTTGCACGGGCCAAGAACTGGGTGAAGGAGCTACAGAGGCAGGCCAGCCCCAACATCGTCATTGCACTTGCGGGTA
ACAAGGCAGACCTGGCCAGCAAGAGAGCCGTGGAATTCCAGGNAGCACAAGCCTATGCAGACGACAATAGTTTGCTGTTT
ATGGAGACCTCAGCAAAGACTGCCATGAACGTGAATGAAATTTTCATGGCATTAGCTAAGAAGCTTCCCAAGAACGAGCC
CCAGAATGCAGCTGGTGCTCCAGGCCGAAACCGAGGTGTGGACCTCCAGGAGAGCAACCCAGCCAGCCGGAGCCAGTGCT
GCAGCAACTGA
ATGGCGGGTCGGGGAGGCACAGCACGACCCAATGGGCCAGCCTCTGGAAACAAGATCTGTCAGTTCAAGCTGGTTCTGCT
GGGGGAGTCTGCGGTGGGCAAATCCAGCCTTGTCCTCCGCTTCGTCAAGGGACAGTTTCACGAGTACCAAGAGAGCACAA
TCGGAGCGGCCTTCCTCACACAGACCGTCTGCCTGGACGACACAACAGTCAAGTTTGAGATCTGGGACACAGCTGGACAG
GAGCGGTATCACAGCCTGGCCCCCATGTACTATCGGGGGGCCCAGGCTGCCATCGTGGTCTATGACATCACCAACACAGA
TACATTTGCACGGGCCAAGAACTGGGTGAAGGAGCTACAGAGGCAGGCCAGCCCCAACATCGTCATTGCACTTGCGGGTA
ACAAGGCAGACCTGGCCAGCAAGAGAGCCGTGGAATTCCAGGNAGCACAAGCCTATGCAGACGACAATAGTTTGCTGTTT
ATGGAGACCTCAGCAAAGACTGCCATGAACGTGAATGAAATTTTCATGGCATTAGCTAAGAAGCTTCCCAAGAACGAGCC
CCAGAATGCAGCTGGTGCTCCAGGCCGAAACCGAGGTGTGGACCTCCAGGAGAGCAACCCAGCCAGCCGGAGCCAGTGCT
GCAGCAACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 33 .51 RPM |
| SRP051959_skeletal_muscle | 16 .14 RPM |
| SRP051959_lymph_node | 19 .68 RPM |
| SRP051959_lung | 26 .78 RPM |
| SRP051959_liver | 26 .27 RPM |
| SRP051959_kidney | 31 .28 RPM |
| SRP051959_heart | 13 .19 RPM |
| SRP051959_colon | 22 .41 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006003 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000003731 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000004529 | within_species_paralog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000007527 | within_species_paralog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000019039 | within_species_paralog | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000011190 | possible_ortholog | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000006819 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000005472 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000005614 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000014761 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000014792 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000009456 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000008398 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000009194 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000018568 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000007092 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_189 | 90.34 | 95.83 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1948 | 78.14 | 84.26 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000000472 retrocopies