Parental gene:

APOOL, ENSCJAG00000008249

Aliases:None
Description:apolipoprotein O-like [Source:HGNC Symbol;Acc:24009]
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:75519504..75594527(+)


>ENSCJAG00000008249
ATGGGAAAACTGACAACCATGCCTGCAGGTCTGATTTATGCATCTGTAAGTGTCCATTCAACCAAAGAAGAGGAATCCAA
AAAGCAGCTAGTGAAACCAGAGCAGCTCCCCATATATACTGCACCACCGCTCCAGTCTAAATATGTTGAAGAGCAGCCTG
GTCATTTACAAATGGGCTTTGCTTCCATCCGCACTGCAACTGGTCGTTATATTGGCTGGTGCAAGGGTGTTTATGTCTTT
GTGAAAAATGGGATAACGAATACAGTACAGTTTGGAAAAGATGCTTATGTCTATCTGAAGAGTCCTCCTCAAGATTTTCT
TCCAAAAATGGGAGTTATTACAGTTTCAGGATTGGTGGGCTTGGTTTCAGCGAGAAAAGGTTCTAAGTTTAAGAAAATTA
CTTATCCTCTGGGACTGGCCACTTTAGGAGCAACTGTTTGCTATCCAGTTCAGTCAGTAATAATTACTAAGGTAATGGGA
AAAAGATATATGCTACAAGCCAGCAAACTTTTGAAACAGTTAAATCACTGTGGACAAAAAGCAACAAAAAAGAGTCACTT
CCTCAGCCTAAGGAAAAAACTAAGACAGCTAGGATCCTCTGCCGAAATAGAAGCATTTGCAAAAACAACTCATGTCTTGA
AACACTCAGTGCCTTTGCCAGCAGAACTCAGCTCTGAAGCGAAGACCAAATCAGTATCCACCTCAGGTGCTACACAGTTT
ATGCCTGACCCCAAGCTCATGGATCACGGGCAGTCCCACCCAGAAGATATAGATATGTACAGCACTAGAAGCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 5 .40 RPM
SRP051959_skeletal_muscle 9 .22 RPM
SRP051959_lymph_node 3 .65 RPM
SRP051959_lung 5 .50 RPM
SRP051959_liver 12 .13 RPM
SRP051959_kidney 9 .21 RPM
SRP051959_heart 9 .70 RPM
SRP051959_colon 7 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000829 ortholog_one2one 1 retrogene
retro_amel_1035,
Canis familiaris ENSCAFG00000017383 ortholog_one2one 1 retrogene
retro_cfam_1490,
Callithrix jacchus ENSCJAG00000004909 within_species_paralog 8 retrogenes
retro_cjac_1360, retro_cjac_1417, retro_cjac_1448, retro_cjac_1767, retro_cjac_1792, retro_cjac_1896, retro_cjac_2038, retro_cjac_2063,
Dipodomys ordii ENSDORG00000011045 ortholog_one2one 1 retrogene
retro_dord_373,
Equus caballus ENSECAG00000009229 ortholog_one2one 1 retrogene
retro_ecab_577,
Homo sapiens ENSG00000155008 ortholog_one2one 1 retrogene
retro_hsap_3253,
Gorilla gorilla ENSGGOG00000016329 ortholog_one2one 1 retrogene
retro_ggor_2213,
Loxodonta africana ENSLAFG00000008844 ortholog_one2one 1 retrogene
retro_lafr_1035,
Microcebus murinus ENSMICG00000015844 ortholog_one2one 1 retrogene
retro_mmur_1511,
Myotis lucifugus ENSMLUG00000011384 ortholog_one2one 1 retrogene
retro_mluc_1364,
Macaca mulatta ENSMMUG00000004335 ortholog_one2one 1 retrogene
retro_mmul_2045,
Mustela putorius furo ENSMPUG00000001899 ortholog_one2many 3 retrogenes
retro_mputfur_606, retro_mputfur_734, retro_mputfur_874,
Nomascus leucogenys ENSNLEG00000002634 ortholog_one2one 1 retrogene
retro_nleu_1702,
Pongo abelii ENSPPYG00000020516 ortholog_one2one 1 retrogene
retro_pabe_2697,
Pan troglodytes ENSPTRG00000022067 ortholog_one2one 1 retrogene
retro_ptro_2200,
Sus scrofa ENSSSCG00000012459 ortholog_one2many 1 retrogene
retro_sscr_610,
Tupaia belangeri ENSTBEG00000010147 ortholog_one2one 5 retrogenes
retro_tbel_2037, retro_tbel_2609, retro_tbel_2840, retro_tbel_3361, retro_tbel_3737,
Tursiops truncatus ENSTTRG00000000429 ortholog_one2one 1 retrogene
retro_ttru_1337,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1783 83.56 55.13
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2. retro_cjac_2464 89.35 100.00
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Download FASTA sequences of all ENSCJAG00000008249 retrocopies