Parental gene: | ENSCJAG00000005286 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 3:110684961..110691340(-) |
>ENSCJAG00000005286
ATGGCCACTATGGTTGCTGTTTGTGGTGGTCTAAGGAGGAAGAAGTTGACACACCTGGTAACCGCTGCTGTCAGCCTTAC
ACATCCCGGGATTCACACTGTGCTGTGGAGAAGAGGTTGTTCACAATATAAACAGGTAGCCAGCAATGAAGACCTGCCCA
TTCCAATGGAAAACCCTTATAAAGAACCACTTAAGAAGTGTATCTTGTGTGGAAAGCGTGTAGATTATAAGAATGTACAG
CTTTTGTCCCAGTTTGTTTCTCCATTTACTGGATGCATTTATGGAAGGCACATTACAGGTCTTTGTGGGAAGAAACAGAA
AGAAATCACAAAAGCAATTAAGAGAGCTCAAATATTGGGGTTTATGCCAGTTACATACAAGGATCCTGCATATCTCAAGG
ACCCTAAAGTTTGTAATATCAGATATCGGGAATAA
ATGGCCACTATGGTTGCTGTTTGTGGTGGTCTAAGGAGGAAGAAGTTGACACACCTGGTAACCGCTGCTGTCAGCCTTAC
ACATCCCGGGATTCACACTGTGCTGTGGAGAAGAGGTTGTTCACAATATAAACAGGTAGCCAGCAATGAAGACCTGCCCA
TTCCAATGGAAAACCCTTATAAAGAACCACTTAAGAAGTGTATCTTGTGTGGAAAGCGTGTAGATTATAAGAATGTACAG
CTTTTGTCCCAGTTTGTTTCTCCATTTACTGGATGCATTTATGGAAGGCACATTACAGGTCTTTGTGGGAAGAAACAGAA
AGAAATCACAAAAGCAATTAAGAGAGCTCAAATATTGGGGTTTATGCCAGTTACATACAAGGATCCTGCATATCTCAAGG
ACCCTAAAGTTTGTAATATCAGATATCGGGAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 9 .43 RPM |
| SRP051959_skeletal_muscle | 10 .44 RPM |
| SRP051959_lymph_node | 7 .90 RPM |
| SRP051959_lung | 6 .95 RPM |
| SRP051959_liver | 13 .10 RPM |
| SRP051959_kidney | 10 .49 RPM |
| SRP051959_heart | 9 .65 RPM |
| SRP051959_colon | 5 .88 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000018155 | ortholog_one2many | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000009198 | ortholog_one2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000018326 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000163319 | possible_ortholog | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000008603 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000010972 | ortholog_one2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000017057 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000015353 | ortholog_one2one | 4 retrogenes | |
| Mus musculus | ENSMUSG00000016833 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000009119 | possible_ortholog | 4 retrogenes | |
| Ochotona princeps | ENSOPRG00000004113 | ortholog_one2many | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000025867 | possible_ortholog | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000016233 | possible_ortholog | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000006439 | ortholog_one2many | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000002178 | ortholog_one2many | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000007084 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000007989 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000012505 | ortholog_one2many | 3 retrogenes | |
| Tarsius syrichta | ENSTSYG00000012924 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000004897 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_234 | 86.75 | 57.64 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1419 | 83.19 | 78.47 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3970 | 80.00 | 55.56 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000005286 retrocopies