Parental gene:

TSEN15, ENSCJAG00000005356

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:18:21974673..21997748(-)


>ENSCJAG00000005356
ATGGAGGAGCGCGGCGATTCCGAGCCGACCCCCGGCTGCAGCGGCCTGGGTCCGGGCGGTGTTCACGGCTTTGGCGACGG
CGGCGGAGCTCCCTCGTGGGCCCCCGAGGACGCCTGGATGGGCTCCCACCCTAAGTATTTAGAAATGATGGAATTAGATA
TAGGAGATGCCACCCAAGTTTATATAGCATTCTTGGTTTACCTGGACCTCATGGAAAGCAAAAGCTGGCATGAAGTAAAC
TGTGTAGGATTACCAGAACTTCAGCTCATCTGCCTTGTTGGTACTGAGATAGAAGGGGAAGGGTTACAGACTGTGGTGCC
TACCCCCATCACTGCTTCCCTCAGCCATAACAGGATAAGGGAGATCTTGAAGGCATCTCGAAAATTGCAAGGTGATCCAG
ATTTGCCGATGTCTTTTACTTTGGCCATAGTGGAGTCTGATTCTACAATAGTCTATTATAAACTTACGGATGGATTTATG
CTGCCAGACCCTCAGAATATTTCTCTTAGAAGATGA

Library Parental gene expression (RPM)
SRP051959_colon 5 .37 RPM
SRP051959_heart 5 .82 RPM
SRP051959_kidney 6 .12 RPM
SRP051959_liver 5 .96 RPM
SRP051959_lung 7 .22 RPM
SRP051959_lymph_node 7 .51 RPM
SRP051959_skeletal_muscle 4 .98 RPM
SRP051959_spleen 7 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000016369 ortholog_one2one 1 retrogene
retro_btau_971,
Dasypus novemcinctus ENSDNOG00000017611 ortholog_one2one 2 retrogenes
retro_dnov_1176, retro_dnov_2529,
Homo sapiens ENSG00000198860 ortholog_one2one 1 retrogene
retro_hsap_1721,
Gorilla gorilla ENSGGOG00000015804 ortholog_one2one 2 retrogenes
retro_ggor_2267, retro_ggor_240,
Loxodonta africana ENSLAFG00000014109 ortholog_one2one 1 retrogene
retro_lafr_684,
Macaca mulatta ENSMMUG00000016409 ortholog_one2one 1 retrogene
retro_mmul_1214,
Mustela putorius furo ENSMPUG00000011790 ortholog_one2one 1 retrogene
retro_mputfur_1261,
Mus musculus ENSMUSG00000014980 ortholog_one2one 1 retrogene
retro_mmus_2721,
Nomascus leucogenys ENSNLEG00000018024 ortholog_one2many 1 retrogene
retro_nleu_98,
Otolemur garnettii ENSOGAG00000003128 ortholog_one2one 1 retrogene
retro_ogar_3264,
Pongo abelii ENSPPYG00000000421 ortholog_one2one 4 retrogenes
retro_pabe_1436, retro_pabe_3065, retro_pabe_3196, retro_pabe_469,
Pan troglodytes ENSPTRG00000023202 ortholog_one2one 2 retrogenes
retro_ptro_1229, retro_ptro_147,
Pteropus vampyrus ENSPVAG00000001103 ortholog_one2one 1 retrogene
retro_pvam_1458,
Ictidomys tridecemlineatus ENSSTOG00000013230 ortholog_one2one 2 retrogenes
retro_itri_1538, retro_itri_1849,
Vicugna pacos ENSVPAG00000002941 ortholog_one2one 2 retrogenes
retro_vpac_381, retro_vpac_565,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3055 75.00 56.73
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Download FASTA sequences of all ENSCJAG00000005356 retrocopies