Parental gene:

TSEN15, ENSPPYG00000000421

Aliases:None
Description:tRNA splicing endonuclease 15 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:16791]
Organism:Orangutan (Pongo abelii)
Coordinates:1:66553293..66574434(-)


>ENSPPYG00000000421
ATGGAGGAGCGCGGCGATTCCGAGCCGACCCCCGGCTGCAGCGGCCTGGGTCCGGGCGGTGTTCGCGGCTTTGGCGACGG
CGGCGGAGCTCCCTCGTGGGCCCCCGAGGACGCCTGGATGGGCACTCACCCTAAGTATTTAGAAATGATGGAATTAGATA
TAGGAGATGCCACCCAAGTTTATGTAGCATTCTTGGTTTACCTGGACCTCATGGAAAGCAAAAGCTGGCATGAAGTAAAC
TGTGTAGGATTACCAGAACTCCAGCTCATCTGCCTTGTTGGTACTGAGATAGAAGGGGAGGGGTTACAGACTGTGGTGCC
TACCCCCATCACTGCTTCCCTCAGCCATAACAGGATAAGGGAGATCTTGAAGGCATCTCGAAAATTGCAAGGTGATCCAG
ATTTGCCGATGTCTTTTACTTTGGCCATAGTGGAGTCTGATTCTACAATAGTCTATTATAAACTTACTGATGGATTTATG
CTGCCAGACCCTCAGGTCAGTGTTGAGGTAACTGACAGCAAGAAGTACAAAAAGAGGAAAATTATGACATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .83 RPM
SRP007412_cerebellum 1 .09 RPM
SRP007412_heart 0 .81 RPM
SRP007412_kidney 0 .76 RPM
SRP007412_liver 0 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000016369 ortholog_one2one 1 retrogene
retro_btau_971,
Callithrix jacchus ENSCJAG00000005356 ortholog_one2one 1 retrogene
retro_cjac_3055,
Dasypus novemcinctus ENSDNOG00000017611 ortholog_one2one 2 retrogenes
retro_dnov_1176, retro_dnov_2529,
Homo sapiens ENSG00000198860 ortholog_one2one 1 retrogene
retro_hsap_1721,
Gorilla gorilla ENSGGOG00000015804 ortholog_one2one 2 retrogenes
retro_ggor_2267, retro_ggor_240,
Loxodonta africana ENSLAFG00000014109 ortholog_one2one 1 retrogene
retro_lafr_684,
Macaca mulatta ENSMMUG00000016409 ortholog_one2one 1 retrogene
retro_mmul_1214,
Mustela putorius furo ENSMPUG00000011790 ortholog_one2one 1 retrogene
retro_mputfur_1261,
Mus musculus ENSMUSG00000014980 ortholog_one2one 1 retrogene
retro_mmus_2721,
Nomascus leucogenys ENSNLEG00000018024 ortholog_one2many 1 retrogene
retro_nleu_98,
Otolemur garnettii ENSOGAG00000003128 ortholog_one2one 1 retrogene
retro_ogar_3264,
Pan troglodytes ENSPTRG00000023202 ortholog_one2one 2 retrogenes
retro_ptro_1229, retro_ptro_147,
Pteropus vampyrus ENSPVAG00000001103 ortholog_one2one 1 retrogene
retro_pvam_1458,
Ictidomys tridecemlineatus ENSSTOG00000013230 ortholog_one2one 2 retrogenes
retro_itri_1538, retro_itri_1849,
Vicugna pacos ENSVPAG00000002941 ortholog_one2one 2 retrogenes
retro_vpac_381, retro_vpac_565,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_469 66.98 57.92
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2. retro_pabe_1436 86.99 71.35
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3. retro_pabe_3065 73.74 53.01
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4. retro_pabe_3196 73.74 53.01
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Download FASTA sequences of all ENSPPYG00000000421 retrocopies