Parental gene:

PNO1, ENSCJAG00000006564

Aliases:None
Description:RNA-binding protein PNO1 [Source:RefSeq peptide;Acc:NP_001257650]
Organism:Marmoset (Callithrix jacchus)
Coordinates:14:38775190..38792561(-)


>ENSCJAG00000006564
TTGGAATCCGAAATGGAAGCACAGAGCGCCGGGGCAGAGGACGGCTTTACCCAGGTCACCCGCAAGGGTGGCCGGCGGGC
GAAAAAACGGCAGGCTGAACAGCTGTCCGCAGCGGGAGAGGGCGGGGATGCGGGCCTTATGGACACAGAAGAGGCCAGGC
CGGCGAAGAGGCCAGTCTTCCCGCCCCTCTGTGGTGACGGGCTCCTGAGTGGGAAAGAAGAAACAAGGAAAATTCCGGTC
CCAGCTAACAGATACACACCATTAAAAGAAAACTGGATGAAGATATTTACTCCTATTGTGGAACATTTGGGACTTCAGAT
ACGCTTTAACTTGAAATCAAGGAATGTAGAAATCAGGACTTGTAAAGAAACCAGGGATGTTAGTGCTCTGACAAAAGCAG
CTGATTTTGTGAAAGCTTTTATTCTTGGCTTTCAGGTGGAGGATGCACTTGCCCTCATCAGGTTGGATGACCTCTTCCTA
GAGTCTTTTGAAATTACAGATGTTAAACCCTTAAAGGGAGACCATCTATCCAGGGCAATAGGAAGAATTGCTGGCAAAGG
AGGAAAAACCAAATTCACCATAGAGAATGTGACACGGACGCGGATAGTTTTGGCTGATGTGAAAGTTCACATCCTTGGCT
CCTTCCAAAACATCAAGATGGCAAGAACTGCCATTTGCAACCTAATCTTGGGAAATCCTCCTTCCAAGGTTTATGGCAAT
ATTCGAGCTGTGGCTAGCAGATCAGCAGATCGATTCTGA

Library Parental gene expression (RPM)
SRP051959_colon 8 .30 RPM
SRP051959_heart 6 .54 RPM
SRP051959_kidney 11 .60 RPM
SRP051959_liver 8 .86 RPM
SRP051959_lung 5 .81 RPM
SRP051959_lymph_node 6 .96 RPM
SRP051959_skeletal_muscle 8 .87 RPM
SRP051959_spleen 7 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003256 ortholog_one2many 1 retrogene
retro_cfam_1886,
Felis catus ENSFCAG00000025330 ortholog_one2many 2 retrogenes
retro_fcat_1521, retro_fcat_864,
Loxodonta africana ENSLAFG00000000046 ortholog_one2many 1 retrogene
retro_lafr_419,
Microcebus murinus ENSMICG00000010897 ortholog_one2many 1 retrogene
retro_mmur_516,
Myotis lucifugus ENSMLUG00000010850 ortholog_one2many 1 retrogene
retro_mluc_1719,
Macaca mulatta ENSMMUG00000017461 ortholog_many2many 2 retrogenes
retro_mmul_102, retro_mmul_352,
Nomascus leucogenys ENSNLEG00000009993 ortholog_one2many 1 retrogene
retro_nleu_2389,
Oryctolagus cuniculus ENSOCUG00000006100 ortholog_many2many 1 retrogene
retro_ocun_47,
Otolemur garnettii ENSOGAG00000016637 ortholog_one2many 1 retrogene
retro_ogar_3025,
Pongo abelii ENSPPYG00000012353 ortholog_one2many 1 retrogene
retro_pabe_1232,
Rattus norvegicus ENSRNOG00000005524 ortholog_one2many 1 retrogene
retro_rnor_712,
Sus scrofa ENSSSCG00000008352 ortholog_one2many 2 retrogenes
retro_sscr_114, retro_sscr_352,
Tarsius syrichta ENSTSYG00000004007 ortholog_one2many 1 retrogene
retro_tsyr_1625,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_273 94.07 100.00
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2. retro_cjac_2615 84.78 53.97
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3. retro_cjac_4127 92.49 100.00
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Download FASTA sequences of all ENSCJAG00000006564 retrocopies