Parental gene: | PNO1, ENSCJAG00000006564 |
| Aliases: | None |
| Description: | RNA-binding protein PNO1 [Source:RefSeq peptide;Acc:NP_001257650] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 14:38775190..38792561(-) |
>ENSCJAG00000006564
TTGGAATCCGAAATGGAAGCACAGAGCGCCGGGGCAGAGGACGGCTTTACCCAGGTCACCCGCAAGGGTGGCCGGCGGGC
GAAAAAACGGCAGGCTGAACAGCTGTCCGCAGCGGGAGAGGGCGGGGATGCGGGCCTTATGGACACAGAAGAGGCCAGGC
CGGCGAAGAGGCCAGTCTTCCCGCCCCTCTGTGGTGACGGGCTCCTGAGTGGGAAAGAAGAAACAAGGAAAATTCCGGTC
CCAGCTAACAGATACACACCATTAAAAGAAAACTGGATGAAGATATTTACTCCTATTGTGGAACATTTGGGACTTCAGAT
ACGCTTTAACTTGAAATCAAGGAATGTAGAAATCAGGACTTGTAAAGAAACCAGGGATGTTAGTGCTCTGACAAAAGCAG
CTGATTTTGTGAAAGCTTTTATTCTTGGCTTTCAGGTGGAGGATGCACTTGCCCTCATCAGGTTGGATGACCTCTTCCTA
GAGTCTTTTGAAATTACAGATGTTAAACCCTTAAAGGGAGACCATCTATCCAGGGCAATAGGAAGAATTGCTGGCAAAGG
AGGAAAAACCAAATTCACCATAGAGAATGTGACACGGACGCGGATAGTTTTGGCTGATGTGAAAGTTCACATCCTTGGCT
CCTTCCAAAACATCAAGATGGCAAGAACTGCCATTTGCAACCTAATCTTGGGAAATCCTCCTTCCAAGGTTTATGGCAAT
ATTCGAGCTGTGGCTAGCAGATCAGCAGATCGATTCTGA
TTGGAATCCGAAATGGAAGCACAGAGCGCCGGGGCAGAGGACGGCTTTACCCAGGTCACCCGCAAGGGTGGCCGGCGGGC
GAAAAAACGGCAGGCTGAACAGCTGTCCGCAGCGGGAGAGGGCGGGGATGCGGGCCTTATGGACACAGAAGAGGCCAGGC
CGGCGAAGAGGCCAGTCTTCCCGCCCCTCTGTGGTGACGGGCTCCTGAGTGGGAAAGAAGAAACAAGGAAAATTCCGGTC
CCAGCTAACAGATACACACCATTAAAAGAAAACTGGATGAAGATATTTACTCCTATTGTGGAACATTTGGGACTTCAGAT
ACGCTTTAACTTGAAATCAAGGAATGTAGAAATCAGGACTTGTAAAGAAACCAGGGATGTTAGTGCTCTGACAAAAGCAG
CTGATTTTGTGAAAGCTTTTATTCTTGGCTTTCAGGTGGAGGATGCACTTGCCCTCATCAGGTTGGATGACCTCTTCCTA
GAGTCTTTTGAAATTACAGATGTTAAACCCTTAAAGGGAGACCATCTATCCAGGGCAATAGGAAGAATTGCTGGCAAAGG
AGGAAAAACCAAATTCACCATAGAGAATGTGACACGGACGCGGATAGTTTTGGCTGATGTGAAAGTTCACATCCTTGGCT
CCTTCCAAAACATCAAGATGGCAAGAACTGCCATTTGCAACCTAATCTTGGGAAATCCTCCTTCCAAGGTTTATGGCAAT
ATTCGAGCTGTGGCTAGCAGATCAGCAGATCGATTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 7 .52 RPM |
| SRP051959_skeletal_muscle | 8 .87 RPM |
| SRP051959_lymph_node | 6 .96 RPM |
| SRP051959_lung | 5 .81 RPM |
| SRP051959_liver | 8 .86 RPM |
| SRP051959_kidney | 11 .60 RPM |
| SRP051959_heart | 6 .54 RPM |
| SRP051959_colon | 8 .30 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000003256 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000025330 | ortholog_one2many | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000000046 | ortholog_one2many | 1 retrogene | |
| Microcebus murinus | ENSMICG00000010897 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000010850 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000017461 | ortholog_many2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000009993 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000006100 | ortholog_many2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000016637 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000012353 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000005524 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000008352 | ortholog_one2many | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000004007 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_273 | 94.07 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2615 | 84.78 | 53.97 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_4127 | 92.49 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000006564 retrocopies