Parental gene:

DKFZP469K0123, ENSPPYG00000012353

Aliases:None
Description:RNA-binding protein PNO1 [Source:RefSeq peptide;Acc:NP_001125677]
Organism:Orangutan (Pongo abelii)
Coordinates:2a:42560879..42580001(-)


>ENSPPYG00000012353
ATGGAATCCGAAATGGAAGCGCAGAGCGCCGGGGCAGAGGAGGGCTTTACCCAGGTCACCCGCAAGGGTGGCCGACGGGC
GAAGAAACGACAGGCTGAACAGCTGTCCGCAGCGGGAGAGAGCGGGGATGCGGACCGCATGGACACAGAGGAGGCCAGGC
CGGCGAAGAGGCCCGTCTTCCCACCCCTCTGTGGGGACGGGCTCCTGAGTGGGAAAGAAGAAACAAGGACAATTCCAGTC
CCAGCTAACAGATACACACCATTGAAAGAAAACTGGATGAAGATATTTACTCCTATTGTGGAACATTTGGGACTTCAGAT
ACGCTTTAACTTGAAATCGAGGAATGTAGAAATCAGGACTTGTAAAGAAACCAAGGATGTTAGTGCTCTGACAAAAGCAG
CCGATTTTGTGAAAGCTTTTATTCTCGGCTTTCAGGTGGAGGATGCACTTGCCCTCATCAGGTTGGATGACCTCTTCCTA
GAGTCTTTTGAAATTACAGATGTTAAACCCCTAAAGGGAGACCATCTATCCAGGGCAATAGGAAGAATCGCTGGCAAAGG
AGGAAAAACCAAATTCACCATAGAGAATGTGACACGGACGAGGATAGTTTTGGCTGATGTGAAAGTTCACATCCTTGGCT
CCTTCCAAAATATCAAGATGGCAAGAACTGCCATTTGCAACCTAATCTTGGGAAATCCTCCTTCCAAGGTTTATGGCAAT
ATTAGAGCTGTGGCTAGCAGATCAGCAGATCGATTCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 4 .81 RPM
SRP007412_cerebellum 5 .72 RPM
SRP007412_heart 5 .12 RPM
SRP007412_kidney 6 .93 RPM
SRP007412_liver 7 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003256 ortholog_one2one 1 retrogene
retro_cfam_1886,
Callithrix jacchus ENSCJAG00000006564 ortholog_one2many 3 retrogenes
retro_cjac_2615, retro_cjac_273, retro_cjac_4127,
Felis catus ENSFCAG00000025330 ortholog_one2one 2 retrogenes
retro_fcat_1521, retro_fcat_864,
Loxodonta africana ENSLAFG00000000046 ortholog_one2one 1 retrogene
retro_lafr_419,
Microcebus murinus ENSMICG00000010897 ortholog_one2one 1 retrogene
retro_mmur_516,
Myotis lucifugus ENSMLUG00000010850 ortholog_one2one 1 retrogene
retro_mluc_1719,
Macaca mulatta ENSMMUG00000017461 ortholog_one2many 2 retrogenes
retro_mmul_102, retro_mmul_352,
Nomascus leucogenys ENSNLEG00000009993 ortholog_one2one 1 retrogene
retro_nleu_2389,
Oryctolagus cuniculus ENSOCUG00000006100 ortholog_one2many 1 retrogene
retro_ocun_47,
Otolemur garnettii ENSOGAG00000016637 ortholog_one2one 1 retrogene
retro_ogar_3025,
Rattus norvegicus ENSRNOG00000005524 ortholog_one2one 1 retrogene
retro_rnor_712,
Sus scrofa ENSSSCG00000008352 ortholog_one2one 2 retrogenes
retro_sscr_114, retro_sscr_352,
Tarsius syrichta ENSTSYG00000004007 ortholog_one2one 1 retrogene
retro_tsyr_1625,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1232 86.96 91.27
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Download FASTA sequences of all ENSPPYG00000012353 retrocopies