RetrogeneDB ID: | retro_ogar_3025 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873698.1:1709182..1709862(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PNO1 | ||
Ensembl ID: | ENSOGAG00000016637 | ||
Aliases: | None | ||
Description: | partner of NOB1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:32790] |
Percent Identity: | 85.59 % |
Parental protein coverage: | 90.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MEEGMESQNAGAEEGFTQVTRKGGRLAKKRRADQLSATGESENASRMDTEEARPSKRPVFPPLSGDGFVS |
MEE.ME.QNA.AEEGFT.VT.KGG.L..KR.ADQL.A.G.SE..S..DTEEARP.KRPVF.PLS.DGF.S | |
Retrocopy | MEEEMEAQNARAEEGFTHVTPKGGWLVNKRQADQLLAMGKSEDESCIDTEEARPLKRPVFLPLSQDGFLS |
Parental | GKGEIRKIPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKETKDVSALTKATDFVKAF |
GKGEIRKIPVPANRYTPLKEN.MKIFTP.VEHLGLQI.FNLKS.NVEIRT..ETKDVSALTKAT.FVKAF | |
Retrocopy | GKGEIRKIPVPANRYTPLKENRMKIFTPLVEHLGLQICFNLKSGNVEIRT-*ETKDVSALTKATNFVKAF |
Parental | ILGFQVEDALALIRLDDLFLES-FEITDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADVKV |
I.GFQVEDAL.LIRLDDLFLES.FEITDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVT.T.IVLADVKV | |
Retrocopy | IPGFQVEDALPLIRLDDLFLES<FEITDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTWTQIVLADVKV |
Parental | HILGSFQNIKMARTAICNL |
HILGSFQNIKMARTAIC.L | |
Retrocopy | HILGSFQNIKMARTAICKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003256 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006564 | 3 retrocopies | |
Felis catus | ENSFCAG00000025330 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000046 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010897 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010850 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017461 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009993 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006100 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016637 | 1 retrocopy |
retro_ogar_3025 ,
|
Pongo abelii | ENSPPYG00000012353 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005524 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008352 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000004007 | 1 retrocopy |