Parental gene:

PNO1, ENSSSCG00000008352

Aliases:None
Description:partner of NOB1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:32790]
Organism:Pig (Sus scrofa)
Coordinates:3:77602767..77616833(-)


>ENSSSCG00000008352
ATGGAAACCCAGATGGAGGCTCAGAGCCCCTTAGCCGAGGACGGCTTCACCCAGGTCACCCGCAAGGGTAGCCGAAGGGC
GAAGAAACGGCAGGCTGAGCAGCTGTCTGCGACGGAGGAAGGAGGGGGCGCGAGCCACATGGACACGGAAGAGGCTCGGC
CGGCGAAGAGGCCCATCTTCCCTCCCCTCTCCGGGGACGGGTTCTTGAGTGGGAAAGAAGAAACTAGGAAAATTCCAGTT
CCTGCTAACAGGTACACGCCGTTAAAAGAGAATTGGATGAAGATATTTACTCCTATTGTGGAGCATTTGGGACTTCAGAT
ACGCTTTAACTTGAAATCGAGGAATGTAGAAATCAGGACTTGTAAAGAAACTAAGGATGTTAGCGCTCTGACAAAAGCAG
CTGATTTTGTGAAAGCCTTTATTCTTGGATTTCAGGTGGAGGACGCACTTGCCCTTGTGAGGTTGGATGACCTCTTCCTA
GAAACTTTTGAAATTACAGATGTTAAGCCCTTGAAAGGAGACCACCTGTCGAGGGCAATAGGCAGAATTGCTGGCAAAGG
AGGAAAAACCAAATTCACCATTGAGAACGTGACCCGGACGCGGATAGTTTTGGCTGATGTGAAAGTTCACATCCTTGGTT
CTTTCCAGAACATCAAGATGGCGAGAACTGCCATTTGCAACCTTATCCTAGGGAATCCTCCATCGAAGGTTTACGGCAAC
ATTCGCGCCGTGGCTAGCAGAGCGGCAGACCGATTCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 9 .42 RPM
SRP014902_testis 19 .66 RPM
SRP018288_heart 9 .51 RPM
SRP018288_kidney 14 .48 RPM
SRP018288_liver 9 .59 RPM
SRP018288_lung 13 .34 RPM
SRP018856_adipose 8 .43 RPM
SRP035408_brain 24 .49 RPM
SRP035408_liver 17 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003256 ortholog_one2one 1 retrogene
retro_cfam_1886,
Callithrix jacchus ENSCJAG00000006564 ortholog_one2many 3 retrogenes
retro_cjac_2615, retro_cjac_273, retro_cjac_4127,
Felis catus ENSFCAG00000025330 ortholog_one2one 2 retrogenes
retro_fcat_1521, retro_fcat_864,
Loxodonta africana ENSLAFG00000000046 ortholog_one2one 1 retrogene
retro_lafr_419,
Microcebus murinus ENSMICG00000010897 ortholog_one2one 1 retrogene
retro_mmur_516,
Myotis lucifugus ENSMLUG00000010850 ortholog_one2one 1 retrogene
retro_mluc_1719,
Macaca mulatta ENSMMUG00000017461 ortholog_one2many 2 retrogenes
retro_mmul_102, retro_mmul_352,
Nomascus leucogenys ENSNLEG00000009993 ortholog_one2one 1 retrogene
retro_nleu_2389,
Oryctolagus cuniculus ENSOCUG00000006100 ortholog_one2many 1 retrogene
retro_ocun_47,
Otolemur garnettii ENSOGAG00000016637 ortholog_one2one 1 retrogene
retro_ogar_3025,
Pongo abelii ENSPPYG00000012353 ortholog_one2one 1 retrogene
retro_pabe_1232,
Rattus norvegicus ENSRNOG00000005524 ortholog_one2one 1 retrogene
retro_rnor_712,
Tarsius syrichta ENSTSYG00000004007 ortholog_one2one 1 retrogene
retro_tsyr_1625,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_114 81.53 61.90
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2. retro_sscr_352 79.27 76.59
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Download FASTA sequences of all ENSSSCG00000008352 retrocopies