RetrogeneDB ID: | retro_rnor_712 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:90124062..90124575(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pno1 | ||
Ensembl ID: | ENSRNOG00000005524 | ||
Aliases: | None | ||
Description: | RNA-binding protein PNO1 [Source:UniProtKB/Swiss-Prot;Acc:Q6VBQ8] |
Percent Identity: | 90.64 % |
Parental protein coverage: | 68.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKDTKDVSALTKAADFVKAFVLGFQVE |
IPVPANRYTPLKENWMKI.TPIVEHLGLQIRFNLKS.NVEIRTCKDTKDVS.LTKAADFVKAFVLGFQV. | |
Retrocopy | IPVPANRYTPLKENWMKILTPIVEHLGLQIRFNLKSGNVEIRTCKDTKDVSTLTKAADFVKAFVLGFQVK |
Parental | DALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADVKVHILGSFQN |
DALALIRLDDLFLESFEITDVK.LKGDHLSRAIGRIAG.GGKTKFTIENV.RTRIVLADVKVHILGSFQN | |
Retrocopy | DALALIRLDDLFLESFEITDVKTLKGDHLSRAIGRIAGRGGKTKFTIENVPRTRIVLADVKVHILGSFQN |
Parental | IKMARTAICNLILGNPPSKVYGNIRAVASRS |
IKMART.ICNLILGNPPSK.Y.......SRS | |
Retrocopy | IKMARTTICNLILGNPPSKLYPRCGQQISRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .07 RPM |
SRP017611_liver | 0 .00 RPM | 5 .85 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003256 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006564 | 3 retrocopies | |
Felis catus | ENSFCAG00000025330 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000046 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010897 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010850 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017461 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009993 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006100 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016637 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012353 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005524 | 1 retrocopy |
retro_rnor_712 ,
|
Sus scrofa | ENSSSCG00000008352 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000004007 | 1 retrocopy |