Parental gene:

SOD1, ENSCJAG00000008983

Aliases:None
Description:superoxide dismutase 1, soluble [Source:HGNC Symbol;Acc:11179]
Organism:Marmoset (Callithrix jacchus)
Coordinates:21:35627266..35636726(+)


>ENSCJAG00000008983
ATGGCGATGAAGGCGGTGTGCGTGTTGAAGGGCGACGGCCCGGTGCAGGGCACCATCAATTTCGAGCAGAAGGAAAGTAA
TGGACCAGTTAAGGTGTGGGGAAGCATTACAGGATTGGCTGAAGGCCTGCATGGATTCCATGTTCATCAGTTTGGAGACA
ACACACAAGGCTGTACCAGTGCAGGTCCTCACTTTAATCCTCTATCCAGAAAACATGGTGGGCCAGAGGATGAAGAGAGG
CATGTTGGAGACCTGGGCAATGTGACTGCTGGTAAAGATGGTGTGGCCAGTGTGTCAATTGAAGATTCTGTGATCTCACT
CTCAGGAGTCCATTCCATCATTGGCCGCACGTTGGTGGTCCATGAAAAAGCAGATGACTTGGGCAAAGGTGGAAATGAAG
AAAGTACAAAGACAGGAAACGCTGGAAGTCGTTTGGCTTGTGGTGTCATTGGGATCGCCCAGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 28 .03 RPM
SRP051959_skeletal_muscle 39 .24 RPM
SRP051959_lymph_node 20 .41 RPM
SRP051959_lung 26 .19 RPM
SRP051959_liver 203 .65 RPM
SRP051959_kidney 94 .76 RPM
SRP051959_heart 43 .83 RPM
SRP051959_colon 41 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018854 ortholog_one2many 1 retrogene
retro_btau_40,
Canis familiaris ENSCAFG00000008859 ortholog_one2one 1 retrogene
retro_cfam_1515,
Dasypus novemcinctus ENSDNOG00000006512 ortholog_one2one 1 retrogene
retro_dnov_816,
Dipodomys ordii ENSDORG00000013850 ortholog_one2one 3 retrogenes
retro_dord_217, retro_dord_41, retro_dord_603,
Erinaceus europaeus ENSEEUG00000015905 ortholog_one2one 1 retrogene
retro_eeur_305,
Felis catus ENSFCAG00000002225 ortholog_one2one 2 retrogenes
retro_fcat_1260, retro_fcat_422,
Homo sapiens ENSG00000142168 ortholog_one2one 3 retrogenes
retro_hsap_1637, retro_hsap_3591, retro_hsap_4117,
Gorilla gorilla ENSGGOG00000015554 ortholog_one2one 4 retrogenes
retro_ggor_1238, retro_ggor_2421, retro_ggor_2690, retro_ggor_2763,
Latimeria chalumnae ENSLACG00000013736 ortholog_one2one 1 retrogene
retro_lcha_51,
Loxodonta africana ENSLAFG00000010708 ortholog_one2many 1 retrogene
retro_lafr_127,
Microcebus murinus ENSMICG00000005253 ortholog_one2one 2 retrogenes
retro_mmur_378, retro_mmur_573,
Macaca mulatta ENSMMUG00000001711 ortholog_one2one 2 retrogenes
retro_mmul_1563, retro_mmul_2372,
Monodelphis domestica ENSMODG00000021041 ortholog_one2one 1 retrogene
retro_mdom_1376,
Mus musculus ENSMUSG00000022982 ortholog_one2one 1 retrogene
retro_mmus_2742,
Nomascus leucogenys ENSNLEG00000003545 ortholog_one2one 3 retrogenes
retro_nleu_1324, retro_nleu_302, retro_nleu_584,
Otolemur garnettii ENSOGAG00000014646 ortholog_one2many 3 retrogenes
retro_ogar_27, retro_ogar_3364, retro_ogar_702,
Ochotona princeps ENSOPRG00000007008 ortholog_one2one 1 retrogene
retro_opri_1190,
Pongo abelii ENSPPYG00000011354 ortholog_one2one 2 retrogenes
retro_pabe_1353, retro_pabe_3370,
Pan troglodytes ENSPTRG00000013847 ortholog_one2one 3 retrogenes
retro_ptro_1107, retro_ptro_2431, retro_ptro_2796,
Pteropus vampyrus ENSPVAG00000005216 ortholog_one2one 2 retrogenes
retro_pvam_281, retro_pvam_563,
Sarcophilus harrisii ENSSHAG00000004195 ortholog_one2one 1 retrogene
retro_shar_278,
Ictidomys tridecemlineatus ENSSTOG00000004434 ortholog_one2one 1 retrogene
retro_itri_1342,
Tupaia belangeri ENSTBEG00000007333 ortholog_one2one 4 retrogenes
retro_tbel_2131, retro_tbel_3531, retro_tbel_3611, retro_tbel_429,
Tarsius syrichta ENSTSYG00000011342 ortholog_one2one 17 retrogenes
retro_tsyr_1055, retro_tsyr_1064, retro_tsyr_1082, retro_tsyr_1112, retro_tsyr_1143, retro_tsyr_1176, retro_tsyr_1262, retro_tsyr_1275, retro_tsyr_1295, retro_tsyr_1369, retro_tsyr_1378, retro_tsyr_1590, retro_tsyr_2107, retro_tsyr_365, retro_tsyr_402, retro_tsyr_823, retro_tsyr_831,
Vicugna pacos ENSVPAG00000012396 ortholog_one2one 1 retrogene
retro_vpac_168,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_652 84.52 100.00
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2. retro_cjac_1477 68.24 54.55
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3. retro_cjac_1986 71.15 66.23
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Download FASTA sequences of all ENSCJAG00000008983 retrocopies