RetrogeneDB ID: | retro_cfam_1515 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 33:949384..949675(+) | ||
Located in intron of: | ENSCAFG00000008741 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SOD1 | ||
Ensembl ID: | ENSCAFG00000008859 | ||
Aliases: | None | ||
Description: | superoxide dismutase 1, soluble [Source:HGNC Symbol;Acc:11179] |
Percent Identity: | 65.66 % |
Parental protein coverage: | 64.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | CTSAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSI-EDSLIALSGDYSIIGRTMVVHEKR-D |
C..AGP..NPL.KKHGG.K.QERHVGDL..V.AG.DGVA.VS..EDSLIA.SGD.S..G.TMVV.EK..D | |
Retrocopy | CARAGPRLNPLFKKHGGSKNQERHVGDLSSVPAGQDGVASVSR<EDSLIAHSGDQSTVGHTMVVLEKN>D |
Parental | DLGKGDNEESTQTGNAGSRLACGVIGIAK |
DL.KG..E.S..TGNAG..LA.G..GI.K | |
Retrocopy | DLSKGVSEKSSHTGNAGHHLAFGAVGIPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 72 .53 RPM |
SRP017611_brain | 0 .00 RPM | 76 .53 RPM |
SRP017611_kidney | 0 .00 RPM | 516 .67 RPM |
SRP017611_liver | 0 .00 RPM | 229 .94 RPM |