Parental gene: | ENSCJAG00000009147 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:100885272..100908354(-) |
>ENSCJAG00000009147
ATGGCGGATTTAGATAAACTCAACATCGACAGCATCATCCAACGGCTACTGGAAGTGAGAGGGTCCAAGCCTGGTAAGAA
TGTCCAGCTTCAGGAGAATGAAATCAGAGGACTGTGCTTAAAGTCTCGTGAGATCTTTCTCAGTCAGCCTATCCTGCTAG
AACTTGAAGCACCACTCAAAATATGTGGTGACATCCATGGGCAATACTATGATTTGCTGCGACTTTTTGAGTATGGTGGT
TTCCCGCCAGAAAGCAACTACCTGTTTCTTGGGGACTATGTGGACAGGGGAAAGCAGTCATTGGAGACAATCTGCCTCTT
ACTGGCCTACAAAATCAAATATCCTGAGAATTTTTTTCTTCTCAGAGGGAACCATGAATGTGCCAGCATCAACAGAATTT
ATGGATTTTATGATGAATGTAAAAGAAGATACAACATTAAATTATGGAAAACTTTCACAGACTGTTTTAACTGTTTACCG
ATAGCAGCCATCGTGGATGAGAAGATATTCTGCTGTCATGGAGGTTTATCACCAGATCTTCAATCTATGGAGCAGATTCG
GCGAATTATGCGACCAACTGATGTACCAGATCAAGGTCTTCTTTGTGATCTTTTGTGGTCTGACCCCGATAAAGATGTCT
TAGGCTGGGGTGAAAATGACAGAGGAGTGTCCTTCACATTTGGTGCAGAAGTGGTTGCAAAATTTCTCCATAAGCATGAT
TTGGATCTTATATGTAGAGCCCATCAGGTGGTTGAAGATGGATATGAATTTTTTGCAAAGAGGCAGTTGGTCACTCTGTT
TTCTGCACCCAATTATTGTGGAGAGTTTGACAATGCAGGTGCCATGATGAGTGTGGACGAAACACTAATGTGTTCTTTTC
AGATTTTAAAGCCTGCAGAGAAAAAGAAGCCAAATGCCACGAGACCTGTAACACCTCCAAGGGGTATGATCACAAAACAA
GCAAAGAAATAG
ATGGCGGATTTAGATAAACTCAACATCGACAGCATCATCCAACGGCTACTGGAAGTGAGAGGGTCCAAGCCTGGTAAGAA
TGTCCAGCTTCAGGAGAATGAAATCAGAGGACTGTGCTTAAAGTCTCGTGAGATCTTTCTCAGTCAGCCTATCCTGCTAG
AACTTGAAGCACCACTCAAAATATGTGGTGACATCCATGGGCAATACTATGATTTGCTGCGACTTTTTGAGTATGGTGGT
TTCCCGCCAGAAAGCAACTACCTGTTTCTTGGGGACTATGTGGACAGGGGAAAGCAGTCATTGGAGACAATCTGCCTCTT
ACTGGCCTACAAAATCAAATATCCTGAGAATTTTTTTCTTCTCAGAGGGAACCATGAATGTGCCAGCATCAACAGAATTT
ATGGATTTTATGATGAATGTAAAAGAAGATACAACATTAAATTATGGAAAACTTTCACAGACTGTTTTAACTGTTTACCG
ATAGCAGCCATCGTGGATGAGAAGATATTCTGCTGTCATGGAGGTTTATCACCAGATCTTCAATCTATGGAGCAGATTCG
GCGAATTATGCGACCAACTGATGTACCAGATCAAGGTCTTCTTTGTGATCTTTTGTGGTCTGACCCCGATAAAGATGTCT
TAGGCTGGGGTGAAAATGACAGAGGAGTGTCCTTCACATTTGGTGCAGAAGTGGTTGCAAAATTTCTCCATAAGCATGAT
TTGGATCTTATATGTAGAGCCCATCAGGTGGTTGAAGATGGATATGAATTTTTTGCAAAGAGGCAGTTGGTCACTCTGTT
TTCTGCACCCAATTATTGTGGAGAGTTTGACAATGCAGGTGCCATGATGAGTGTGGACGAAACACTAATGTGTTCTTTTC
AGATTTTAAAGCCTGCAGAGAAAAAGAAGCCAAATGCCACGAGACCTGTAACACCTCCAAGGGGTATGATCACAAAACAA
GCAAAGAAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 93 .21 RPM |
| SRP051959_skeletal_muscle | 62 .13 RPM |
| SRP051959_lymph_node | 105 .75 RPM |
| SRP051959_lung | 67 .66 RPM |
| SRP051959_liver | 41 .91 RPM |
| SRP051959_kidney | 51 .38 RPM |
| SRP051959_heart | 62 .29 RPM |
| SRP051959_colon | 63 .72 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000013861 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000011198 | ortholog_one2one | 2 retrogenes | |
| Ciona intestinalis | ENSCING00000004542 | ortholog_many2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000000983 | within_species_paralog | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000010484 | possible_ortholog | 2 retrogenes | |
| Equus caballus | ENSECAG00000017228 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000015721 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000010661 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000004455 | ortholog_one2one | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000009275 | possible_ortholog | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000005448 | possible_ortholog | 1 retrogene | |
| Sorex araneus | ENSSARG00000000571 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000013852 | possible_ortholog | 4 retrogenes | |
| Vicugna pacos | ENSVPAG00000008411 | possible_ortholog | 1 retrogene | |
| Drosophila melanogaster | FBgn0003134 | ortholog_many2many | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_822 | 92.66 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1062 | 91.24 | 67.18 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1165 | 86.73 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1408 | 92.28 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_2304 | 92.50 | 99.07 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_2535 | 83.74 | 88.54 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_3288 | 92.79 | 94.43 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000009147 retrocopies