Parental gene: | SUCLA2, ENSCJAG00000009278 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:66777014..66855496(+) |
>ENSCJAG00000009278
ATGGCGGCCTCCGTATTCTACGGCCGGTTGTTGGCTGCCGTCACCCTTCGGAACCACCGGCCTCGGTCGGCCCTGCGGGC
CGCTGCTCAGGTTCTGGGAAGTTCTGGATTGTTTAATAACCATGGACTTCAAGTACAGCAGCAACAGCAAAGGAATCTCT
CACTGCATGAATACATGAGTATGGAATTATTGCAAGAAGCTGGTGTCTCCATTCCCAAAGGATATGTGGCAAAGTCACCA
GATGAAGCTTACGCAATTGCCAAAAAATTAGGTTCAAAAGATGTTGTGATAAAGGCACAGGTTTTAGCTGGTGGTAGAGG
AAAAGGAACATTTGAAAGTGGCCTCAAAGGAGGAGTGAAGATAGTTTTCTCTCCAGAAGAAGCAAAAGCTGTTTCTTCAC
AAATGATTGGGAAAAAGTTGTTTACCAAGCAAACGGGAGAAAAGGGCAGAATATGCAATCAAGTATTGGTCTGTGAGCGA
AAATATCCCAGGAGGGAGTACTACTTTGCAATAACAATGGAAAGGTCATTTCAAGGTCCTGTATTAATAGGAAGTTCACA
TGGTGGTGTCAACATTGAAGATGTTGCTGCTGAGACTCCTGAAGCAATAATTAAAGAACCTATTGATATTGTGGAAGGCA
TCAAAAAGGAACAAGCTCTCCGGCTTGCACAGAAGATGGGGTTTCCACCTAATATTGTGGATTCAGCAGCAGAAAACATG
GTCAAGCTTTACAGCCTTTTTCTGAAATACGATGCAACCATGATAGAAATAAATCCAATGGTGGAAGATTCAGATGGAGC
TGTATTGTGTATGGATGCAAAGATCAATTTTGACTCTAATTCAGCCTATCGCCAAAAGAAAATCTTTGATCTACAAGACT
GGACCCAGGAAGATGAAAGAGACAAAGATGCTGCTAAGGCAAATCTCAACTACATTGGCCTTGATGGAAATATAGGCTGC
CTAGTAAATGGTGCTGGTTTGGCTATGGCCACAATGGATATAATAAAACTTCATGGAGGGACTCCAGCCAACTTCCTTGA
TGTTGGTGGTGGTGCTACAGTCCATCAAGTAACAGAAGCGTTTAAGCTTATCACTTCAGATAAAAAGGTACTGGCTATTC
TGGTCAACATTTTTGGAGGAATTATGCGCTGTGATGTTATTGCACAGGGTATAGTCATGGCAGTAAAAGATTTGGAAATT
AGAATCCCTGTTGTGGTACGGTTACAAGGTACACGAGTCGATGATGCTAAGGCACTGAGAGCAGACAGTGGACTTAAAAT
ACTTGCTTGTGATGACTTGGATGAAGCTGCTAGAATGGTAGTAAAACTCTCTGAAATAGTGACCTTAGCAAAGCAAGCAC
ATGTGGATGTGAAATTTCAGTTGCCAATATGA
ATGGCGGCCTCCGTATTCTACGGCCGGTTGTTGGCTGCCGTCACCCTTCGGAACCACCGGCCTCGGTCGGCCCTGCGGGC
CGCTGCTCAGGTTCTGGGAAGTTCTGGATTGTTTAATAACCATGGACTTCAAGTACAGCAGCAACAGCAAAGGAATCTCT
CACTGCATGAATACATGAGTATGGAATTATTGCAAGAAGCTGGTGTCTCCATTCCCAAAGGATATGTGGCAAAGTCACCA
GATGAAGCTTACGCAATTGCCAAAAAATTAGGTTCAAAAGATGTTGTGATAAAGGCACAGGTTTTAGCTGGTGGTAGAGG
AAAAGGAACATTTGAAAGTGGCCTCAAAGGAGGAGTGAAGATAGTTTTCTCTCCAGAAGAAGCAAAAGCTGTTTCTTCAC
AAATGATTGGGAAAAAGTTGTTTACCAAGCAAACGGGAGAAAAGGGCAGAATATGCAATCAAGTATTGGTCTGTGAGCGA
AAATATCCCAGGAGGGAGTACTACTTTGCAATAACAATGGAAAGGTCATTTCAAGGTCCTGTATTAATAGGAAGTTCACA
TGGTGGTGTCAACATTGAAGATGTTGCTGCTGAGACTCCTGAAGCAATAATTAAAGAACCTATTGATATTGTGGAAGGCA
TCAAAAAGGAACAAGCTCTCCGGCTTGCACAGAAGATGGGGTTTCCACCTAATATTGTGGATTCAGCAGCAGAAAACATG
GTCAAGCTTTACAGCCTTTTTCTGAAATACGATGCAACCATGATAGAAATAAATCCAATGGTGGAAGATTCAGATGGAGC
TGTATTGTGTATGGATGCAAAGATCAATTTTGACTCTAATTCAGCCTATCGCCAAAAGAAAATCTTTGATCTACAAGACT
GGACCCAGGAAGATGAAAGAGACAAAGATGCTGCTAAGGCAAATCTCAACTACATTGGCCTTGATGGAAATATAGGCTGC
CTAGTAAATGGTGCTGGTTTGGCTATGGCCACAATGGATATAATAAAACTTCATGGAGGGACTCCAGCCAACTTCCTTGA
TGTTGGTGGTGGTGCTACAGTCCATCAAGTAACAGAAGCGTTTAAGCTTATCACTTCAGATAAAAAGGTACTGGCTATTC
TGGTCAACATTTTTGGAGGAATTATGCGCTGTGATGTTATTGCACAGGGTATAGTCATGGCAGTAAAAGATTTGGAAATT
AGAATCCCTGTTGTGGTACGGTTACAAGGTACACGAGTCGATGATGCTAAGGCACTGAGAGCAGACAGTGGACTTAAAAT
ACTTGCTTGTGATGACTTGGATGAAGCTGCTAGAATGGTAGTAAAACTCTCTGAAATAGTGACCTTAGCAAAGCAAGCAC
ATGTGGATGTGAAATTTCAGTTGCCAATATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 18 .49 RPM |
| SRP051959_skeletal_muscle | 61 .52 RPM |
| SRP051959_lymph_node | 14 .31 RPM |
| SRP051959_lung | 16 .48 RPM |
| SRP051959_liver | 16 .98 RPM |
| SRP051959_kidney | 39 .36 RPM |
| SRP051959_heart | 51 .94 RPM |
| SRP051959_colon | 23 .03 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000014610 | ortholog_one2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000014961 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000136143 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000008224 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000007539 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000001488 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000002948 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000007452 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000005352 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000005859 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1233 | 78.80 | 84.69 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2379 | 88.94 | 93.74 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000009278 retrocopies