RetrogeneDB ID: retro_mputfur_768

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896945.1:12286187..12287600(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019005
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SUCLA2
• Ensembl ID: ENSMPUG00000001488
• Aliases: None
• Description: succinate-CoA ligase, ADP-forming, beta subunit [Source:HGNC Symbol;Acc:11448]

Sequence

>retro_mputfur_768
GCCGAGGGGACGGGGTCTGGCTCAGAAAGGGCGGCCTCCATGTTCTACAGCCGGTTATTGGCTACCACCGCACTTAGGAG
CCGTGGGTCCCGGCCTGCGCTTCGGTCCGCCGCCCAGGTTCTGGGAAGTTCTGGATTTTTTAACAACCATGGACTCCAAA
TACAGCAGCAGCAACAAAGGAATCTCTCACTACATGAATACATGAGTATGGAATTGTTGCAAGAAGGTGGTGTCTCCATT
CCCAAAGGACATGTGGCAAAATCACCAGATGAAGCTTATGCAGTTGCCAAAAAATTAGGTTCAAAAGATGTTGTGATAAA
GGCACAGGTTTTAGCTGGTGGAAGAGGAAAAGGAACATTTGAGAGTGGCCTCAAAGGAGGAGTGAAGATAGTTTTCTCTC
CAGAAGAAGCAAAAGCTGTTTCCTCACAAATTATTGGGAAAAAGTTGTTTACCAAGCAAACAGGAGAAAAAGGCAGAATA
TGCAATCAAGTATTGGTTTGTGAGAGAAGATGTCCCCGGAGAGAATACTACTTTGCAATAACGATGGAAAGGTCATTTCA
AGGTCCTGTATTAATAGGAAGTTCTCAAGGTGGTGTCAACATTGAAGATGTTGCTGCTGAGACTCCTGAGGCCATATTTA
AAGAACCTATTGATATTGTAGAAGGCATCAAGAAGGAACAAGCTGTCCGGCTTGCACAGAAGATGGGATTTCCACCTAAT
ATTGTGGATTCGGCGGCAGAAAATATGGTCAAGCTTTACAACCTTTTTCTGAAATACGATGCAACTATGGTAGAAATAAA
TCCAGTGGTAGAGGATTCAGATGGATCTGTGCTGTGCATGGATGCAAAGATCAACTTTGATTCTAATTCAGCTTATTGCC
AGAAGAAAATCTTTGACTTACAGGATTGGACCCAGGAAGATGAAAGGGAGGAAGGTGCAGCTAAGGCAGATCTCAACTAC
ATTGGCCTTGATGGAAATATAGGCTGTATAGTAAATGGTGCTGGTTTGGCAATGGCCACAATGGATATAATAAAACTTCA
CGGAGGGACTCCAGCGAACTTTCTTGATGTTGGTGGTGGTGCCACAGTCCATCAAGTAACAGAAGCATTTAAGCTTATCA
CTTCAGATAAAAAGGTACTGGCTATTCTGGTCAACATTTTTGGAGTCATATGGCGTGATGTTATTGCACAGGGTATAGTT
ATGGCAGTAAAGGATTTGGAAATTAAAATACCTATTGTGGTTCGGTTACAAGGTACAAGAGTTGATGATGCTAAGGCACT
GATAGCAGACAGTGGACTTAAAATTCTTGCTTGTGATGACTTGGATGAAGCTGCTAAAATGGTTGTAAAGCTCTCTGAAA
TAGTGACCTTAGCCAAGCAAGCCCATGTGGATGTGAAATTTCAGTTGCCAATC

Alignment

ORF - retro_mputfur_768 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.25 %
• Parental protein coverage: 94.59 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AEGTGSGSEMAASMFYSRLLATTALRSRGSRPALRAAAQVLGSSGFFNNHGLQIQQQQQRNLSLHEYMSM
          AEGTGSGSE.AASMFYSRLLATTALRSRGSRPALR.AAQVLGSSGFFNNHGLQIQQQQQRNLSLHEYMSM
Retrocopy AEGTGSGSERAASMFYSRLLATTALRSRGSRPALRSAAQVLGSSGFFNNHGLQIQQQQQRNLSLHEYMSM

Parental  ELLQEAGVSIPKGHVAKSPDEAYAVAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAV
          ELLQE.GVSIPKGHVAKSPDEAYAVAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAV
Retrocopy ELLQEGGVSIPKGHVAKSPDEAYAVAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAV

Parental  SSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPE
          SSQ.IGKKLFTKQTGEKGRICNQVLVCERR.PRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPE
Retrocopy SSQIIGKKLFTKQTGEKGRICNQVLVCERRCPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPE

Parental  AIFKEPIDIVEGIKKEQAVRLAQKMGFPPNIVDSAAENMVKLYNLFLKYDATMVEINPMVEDSDGSVLCM
          AIFKEPIDIVEGIKKEQAVRLAQKMGFPPNIVDSAAENMVKLYNLFLKYDATMVEINP.VEDSDGSVLCM
Retrocopy AIFKEPIDIVEGIKKEQAVRLAQKMGFPPNIVDSAAENMVKLYNLFLKYDATMVEINPVVEDSDGSVLCM

Parental  DAKINFDSNSAYRQKKIFDLQDWTQEDEREKGAAKADLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGT
          DAKINFDSNSAY.QKKIFDLQDWTQEDERE.GAAKADLNYIGLDGNIGC.VNGAGLAMATMDIIKLHGGT
Retrocopy DAKINFDSNSAYCQKKIFDLQDWTQEDEREEGAAKADLNYIGLDGNIGCIVNGAGLAMATMDIIKLHGGT

Parental  PANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPIVVRLQGT
          PANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFG.I.R.DVIAQGIVMAVKDLEIKIPIVVRLQGT
Retrocopy PANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGVIWR-DVIAQGIVMAVKDLEIKIPIVVRLQGT

Parental  RVDDAKALIADSGLKILACDDLDEAAKMVVKLSEIVTLAKQAQVDVKFQLPI
          RVDDAKALIADSGLKILACDDLDEAAKMVVKLSEIVTLAKQA.VDVKFQLPI
Retrocopy RVDDAKALIADSGLKILACDDLDEAAKMVVKLSEIVTLAKQAHVDVKFQLPI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_768 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_768 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 22 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000014610	2 retrocopies	retro_acar_26, retro_acar_52,
Callithrix jacchus	ENSCJAG00000009278	2 retrocopies	retro_cjac_1233, retro_cjac_2379,
Cavia porcellus	ENSCPOG00000014961	1 retrocopy	retro_cpor_1113,
Homo sapiens	ENSG00000136143	3 retrocopies	retro_hsap_2236, retro_hsap_2281, retro_hsap_3445,
Gorilla gorilla	ENSGGOG00000008224	3 retrocopies	retro_ggor_1668, retro_ggor_1694, retro_ggor_2327,
Macaca mulatta	ENSMMUG00000007539	1 retrocopy	retro_mmul_1231,
Mustela putorius furo	ENSMPUG00000001488	1 retrocopy	retro_mputfur_768 ,
Nomascus leucogenys	ENSNLEG00000002948	3 retrocopies	retro_nleu_1963, retro_nleu_2140, retro_nleu_2302,
Otolemur garnettii	ENSOGAG00000007452	1 retrocopy	retro_ogar_2196,
Pongo abelii	ENSPPYG00000005352	2 retrocopies	retro_pabe_1939, retro_pabe_2852,
Pan troglodytes	ENSPTRG00000005859	3 retrocopies	retro_ptro_1581, retro_ptro_1615, retro_ptro_2337,