Parental gene:

DKFZP459G1612, ENSPPYG00000005352

Aliases:None
Description:succinyl-CoA ligase [Source:RefSeq peptide;Acc:NP_001124678]
Organism:Orangutan (Pongo abelii)
Coordinates:13:48074893..48146450(-)


>ENSPPYG00000005352
ATGGCGGCTTCCATGTTCTACGGCCGGCTGGTGGCCGTCGCCACCTTTCGGAACCACCGGCCTCGGACGGCCCAGCGGGC
CGCTGCTCAGGTTCTGGGAAGTTCTGGATTGTTTAATAACCATGGACTCCAAGTACAGCAGCAACAGCAAAGGAATCTCT
CACTACATGAATACATGAGTATGGAATTATTGCAAGAAGCTGGTGTCTCCATTCCCAAAGGATATGTGGCAAAGTCACCA
GATGAAGCTTATGCAATTGCCAAAAAATTAGGTTCAAAAGATGTTGTGATAAAGGCACAGGTTTTAGCTGGTGGTAGAGG
AAAAGGAACATTTGAAAGTGGCCTCAAAGGAGGAGTGAAGATAGTTTTCTCTCCAGAAGAAGCAAAAGCTGTTTCTTCAC
AAATGATTGGGAAAAAATTGTTTACCAAGCAAACAGGAGAAAAGGGCAGAATATGCAATCAAGTATTGGTCTGTGAGCGA
AAATATCCCAGGAGAGAATACTACTTTGCAATAACAATGGAAAGGTCATTTCAAGGTCCTGTATTAATAGGAAGTTCACA
TGGTGGTGTCAACATTGAAGATGTTGCTGCTGAGACTCCTGAAGCAATAATTAAAGAACCTATTGATATTGAAGAAGGCA
TCAAAAAGGAACAAGCTCTCCACCTTGCACAGAAGATGGGATTTCCACCTACTATTGTGGAATCAGCAGCAGAAAACATG
GTCAAGCTTTACAGCCTTTTTCTGAAATACGATGCAACCATGATAGAAATAAATCCAATGGTGGAAGATTCAGATGGAGC
TGTATTGTGTATGGATGCAAAGATCAATTTTGACTCTAATTCAGCCTATCGCCAAAAGAAAATCTTTGATCTACAGGACT
GGACCCAGGAAGATGAAAGGGACAAAGATGCTGCTAAGGCAAATCTCAACTACATTGGTCTCGATGGAAATATAGGCTGC
CTAGTAAATGGTGCTGGTTTGGCTATGGCCACAATGGATATAATAAAACTTCATGGAGGGACTCCAGCCAACTTCCTTGA
TGTTGGTGGTGGTGCTACAGTCCATCAAGTAACAGAAGCATTTAAGCTTATCACTTCAGATAAAAAGGTACTGGCTATTC
TGGTCAACATTTTTGGAGGAATCATGCGCTGTGATGTTATTGCACAGGGTATAGTCATGGCAGTAAAAGACTTGGAAATT
AAAATACCTGTTGTGGTACGGTTACAAGGTACACGAGTCGATGATGCTAAGGCACTGATAGCGGACAGTGGACTTAAAAT
ACTTGCTTGTGATGACTTGGATGAAGCTGCTAGAATGGTTGTAAAGCTCTCTGAAATAGTGACCTTAGCGAAGCAAGCAC
ATGTGGATGTGAAATTTCAGTTGCCAATATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 45 .34 RPM
SRP007412_cerebellum 54 .48 RPM
SRP007412_heart 72 .07 RPM
SRP007412_kidney 33 .31 RPM
SRP007412_liver 9 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014610 ortholog_one2one 2 retrogenes
retro_acar_26, retro_acar_52,
Callithrix jacchus ENSCJAG00000009278 ortholog_one2one 2 retrogenes
retro_cjac_1233, retro_cjac_2379,
Cavia porcellus ENSCPOG00000014961 ortholog_one2one 1 retrogene
retro_cpor_1113,
Homo sapiens ENSG00000136143 ortholog_one2one 3 retrogenes
retro_hsap_2236, retro_hsap_2281, retro_hsap_3445,
Gorilla gorilla ENSGGOG00000008224 ortholog_one2one 3 retrogenes
retro_ggor_1668, retro_ggor_1694, retro_ggor_2327,
Macaca mulatta ENSMMUG00000007539 ortholog_one2one 1 retrogene
retro_mmul_1231,
Mustela putorius furo ENSMPUG00000001488 ortholog_one2one 1 retrogene
retro_mputfur_768,
Nomascus leucogenys ENSNLEG00000002948 ortholog_one2one 3 retrogenes
retro_nleu_1963, retro_nleu_2140, retro_nleu_2302,
Otolemur garnettii ENSOGAG00000007452 ortholog_one2one 1 retrogene
retro_ogar_2196,
Pongo abelii ENSPPYG00000013735 within_species_paralog 1 retrogene
retro_pabe_2624,
Pan troglodytes ENSPTRG00000005859 ortholog_one2one 3 retrogenes
retro_ptro_1581, retro_ptro_1615, retro_ptro_2337,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1939 72.86 75.16
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2. retro_pabe_2852 87.44 92.87
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Download FASTA sequences of all ENSPPYG00000005352 retrocopies