Parental gene:

SUCLA2, ENSCPOG00000014961

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_6:57908023..57954535(-)


>ENSCPOG00000014961
GTTCTGGGAAGTTCTGGATTATTTAATAATCATGGACTGCAAATACAGCAGCAACAGCAGAGAAACCTGTCACTACATGA
ATATATGAGTATGGAATTATTGCAAGAAGCTGGTGTCTCTATTCCTAAAGGATATGTGGCAAAGTCTGCGGATGAAGCTT
ATGCAATTGCCAAAAAATTAGGTTCCAAAGATGTTGTGATAAAGGCCCAGGTTTTAGCTGGTGGTAGAGGAAAAGGAACC
TTTGAAAGTGGCCTGAAAGGAGGAGTGAAGATAGTTTTCTCTCCAGAAGAAGCAAAAGCTGTTTCTTCACAGATGATTGG
GAAAAAGTTGTTTACCAAACAAACTGGAGCAAAGGGCAGAATATGCAATCAAGTTTTGATTTGTGAGCGAAAATACCCCA
GGAGAGAATACTACTTTGCAATAACAATGGAAAGGTCATTTCAAGGTCCTGTATTAATAGGAAGTTCACAAGGTGGTGTT
AATATCGAAGATGTTGCTGCTGAGACCCCTGATGCCATAGTTAAAGAACCTGTTGATATTGTAGAGGGCATCAAAAAGGA
ACAAGCTGTCCAGCTGGCAACGAAGATGGGATTTCCAGCTAATATTGTGGATTCTGCAGCAGAAAACATGGTCAAGCTTT
ATAATCTTTTTCTGAAATATGATGCAACCATGGTAGAAATAAATCCAATGGTAGAAGATTCAGATGGAGCTGTGCTTTGT
ATGGATGCAAAGATCAATTTTGATTCAAATTCAGCGTATCGCCAAAAGAAAATCTTTGATCTTCAGGACTGGACCCAGGA
AGATGAAAGGGACAGAGATGCAGCTAAGGCGAATCTCAACTATATTGGCCTTGATGGAAACATAGGCTGTCTTGTAAATG
GTGCTGGTTTGGCTATGGCCACCATGGATATAATAAAGCTTCATGGAGGGACTCCAGCCAACTTCCTTGATGTTGGTGGT
GGTGCCACAGTTCAACAAGTAACAGAAGCATTTAAGCTGATCACTTCAGATAAAAAGGTACTGGCTATTCTGGTCAATAT
TTTTGGAGGAATAATGCGATGTGATGTTATTGCACAGGGTATAGTCATGGCAGTAAAAGACTTGGAAATTAAAATACCTG
TTGTGGTACGGTTACAAGGTACACGAGTTGATGATGCTAAGGCACTGATAGCAGACAGTGGGCTTAAAATTCTTGCTTGT
GATGACTTGGATGAAGCTGCTAAAATGGTTGTAAAGCTCTCTGAAATAGTGACCTTAGCCAAGCAAGCCCATGTAGATGT
GAAATTTCAGTTGCCAATCTGA

Library Parental gene expression (RPM)
SRP017611_brain 66 .49 RPM
SRP017611_kidney 72 .34 RPM
SRP017611_liver 24 .20 RPM
SRP040447_lung 24 .21 RPM
SRP040447_skeletal_muscle 105 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014610 ortholog_one2one 2 retrogenes
retro_acar_26, retro_acar_52,
Callithrix jacchus ENSCJAG00000009278 ortholog_one2one 2 retrogenes
retro_cjac_1233, retro_cjac_2379,
Homo sapiens ENSG00000136143 ortholog_one2one 3 retrogenes
retro_hsap_2236, retro_hsap_2281, retro_hsap_3445,
Gorilla gorilla ENSGGOG00000008224 ortholog_one2one 3 retrogenes
retro_ggor_1668, retro_ggor_1694, retro_ggor_2327,
Macaca mulatta ENSMMUG00000007539 ortholog_one2one 1 retrogene
retro_mmul_1231,
Mustela putorius furo ENSMPUG00000001488 ortholog_one2one 1 retrogene
retro_mputfur_768,
Nomascus leucogenys ENSNLEG00000002948 ortholog_one2one 3 retrogenes
retro_nleu_1963, retro_nleu_2140, retro_nleu_2302,
Otolemur garnettii ENSOGAG00000007452 ortholog_one2one 1 retrogene
retro_ogar_2196,
Pongo abelii ENSPPYG00000005352 ortholog_one2one 2 retrogenes
retro_pabe_1939, retro_pabe_2852,
Pan troglodytes ENSPTRG00000005859 ortholog_one2one 3 retrogenes
retro_ptro_1581, retro_ptro_1615, retro_ptro_2337,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1113 60.96 56.58
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Download FASTA sequences of all ENSCPOG00000014961 retrocopies