Parental gene:

MMU.869, ENSMMUG00000007539

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:17:26752721..26815750(-)


>ENSMMUG00000007539
ATGGCGGCCTCCGTGTTCTACGGCCGGCTGTTGGCCGTCGCTACCCTTCGGAACCACAGGCCTCGGACAGCCCTGGGGGC
CGCTGCTCAGGTTCTGGGAAGTTCTGGATTGTTTAATAACCATGGACTCCAAGTACAGCAGCAACAGCAAAGGAATCTCT
CACTACATGAATACATGAGTATGGAATTATTACAAGAAGCTGGTGTCTCCATTCCCAAAGGATGTGTGGCAAAGTCACCA
GATGAAGCTTATGCAGTTGCCAAAAAATTAGGTTCAAAAGATGTTGTGATAAAGGCGCAGGTCTTAGCTGGTGGTAGAGG
AAAAGGAACGTTTGAAAGTGGCCTCAAAGGAGGAGTGAAGATAGTTTTCTCTCCAGAAGAAGCAAAAGCTGTTTCTTCAC
AAATGATTGGGAAAAAATTGTTTACCAAGCAAACGGGAGAAAAGGGCAGAATATGCAATCAAGTATTGGTCTGTGAGCGG
AAATATCCCAGGAGAGAATACTACTTTGCAATAACAATGGAAAGGTCATTTCAAGGTCCTGTATTAATAGGAAGTTCACA
GGGTGGTGTCAACATTGAAGATGTTGCTGCTGAGACTCCTGAAGCAATAATTACAGAACCTATTGATATTGAAGAAGGCA
TCAAAAAGGAACAAGCTCTCCAGCTTGCACAGAAGATGGGATTTCCACCTAATATTGTGGAATCAGCAGCAGAAAACATG
GTCAAGCTTTACAGCCTTTTTCTGAAATATGATGCAACCATGATAGAAATAAATCCAATGGTGGAAGATTCAGATGGAGC
TGTATTGTGTATGGATGCAAAGATCAATTTTGACTCTAATTCAGCCTATCGCCAAAAGAAAATCTTTGATCTACAGGACT
GGACCCAGGAAGATGAAAGGGACAAAGACGCTGCTCAGGCAAATCTCAACTACATTGGCCTCGATGGAAATATAGGCTGC
CTAGTAAATGGTGCTGGTTTGGCTATGGCCACAATGGATATAATAAAACTTCATGGAGGGACTCCAGCCAACTTCCTTGA
TGTTGGTGGTGGTGCTACAGTCCATCAAGTAACAGAAGCATTTAAGCTTATCACTTCAGATAAAAAGGTACTGGCTATTC
TGGTCAACATATTTGGAGGAATCATGCGCTGTGATGTTATCGCACAGGGTATAGTCACGGCACTAAAAGATTTGGAAATT
AAAATACCTGTTGTGGTAGATGATGCTAAGGCACTGATAGCAGGAAGCGGACTTAAAATACTTGCTTGTGATGACTTGGA
TGAAGCTGCTAGAATGGTTGTAAAGCTCTCTGAAATAGTGACCTTAGCGAAGCAAGCGCATGTGGATGTGAAATTTCAGT
TGCCAATATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 50 .61 RPM
SRP007412_brain 73 .06 RPM
SRP007412_cerebellum 45 .33 RPM
SRP007412_heart 68 .07 RPM
SRP007412_kidney 47 .65 RPM
SRP007412_liver 5 .78 RPM
SRP007412_testis 20 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014610 ortholog_one2many 2 retrogenes
retro_acar_26, retro_acar_52,
Callithrix jacchus ENSCJAG00000009278 ortholog_one2one 2 retrogenes
retro_cjac_1233, retro_cjac_2379,
Cavia porcellus ENSCPOG00000014961 ortholog_one2one 1 retrogene
retro_cpor_1113,
Homo sapiens ENSG00000136143 ortholog_one2one 3 retrogenes
retro_hsap_2236, retro_hsap_2281, retro_hsap_3445,
Gorilla gorilla ENSGGOG00000008224 ortholog_one2one 3 retrogenes
retro_ggor_1668, retro_ggor_1694, retro_ggor_2327,
Macaca mulatta ENSMMUG00000009693 within_species_paralog 2 retrogenes
retro_mmul_1273, retro_mmul_1995,
Mustela putorius furo ENSMPUG00000001488 ortholog_one2many 1 retrogene
retro_mputfur_768,
Nomascus leucogenys ENSNLEG00000002948 ortholog_one2one 3 retrogenes
retro_nleu_1963, retro_nleu_2140, retro_nleu_2302,
Otolemur garnettii ENSOGAG00000007452 ortholog_one2one 1 retrogene
retro_ogar_2196,
Pongo abelii ENSPPYG00000005352 ortholog_one2one 2 retrogenes
retro_pabe_1939, retro_pabe_2852,
Pan troglodytes ENSPTRG00000005859 ortholog_one2one 3 retrogenes
retro_ptro_1581, retro_ptro_1615, retro_ptro_2337,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1231 88.38 80.70
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Download FASTA sequences of all ENSMMUG00000007539 retrocopies