Parental gene: | TPM1, ENSCJAG00000004355 |
| Aliases: | None |
| Description: | tropomyosin 1 (alpha) [Source:HGNC Symbol;Acc:12010] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 10:5429064..5458631(+) |
>ENSCJAG00000004355
ATGGACGCCATCAAGAAGAAGATGCAGATGCTGAAGCTCGACAAGGAGAACGCCTTGGATCGAGCTGAGCAGGCGGAGGC
CGACAAGAAGGCGGCGGAAGACAGGAGCAAGCAGCTCGAGGAGGACATCGCGGCCAAGGAGAAGCTGCTGCGGGTGTCGG
AGGACGAGCGGGACCGGGTGCTGGAGGAGCTGCACAAGGCGGAGGACAGCCTCCTGGCCGCCGAGGAGGCCGCCGCCAAG
CTGGAAGATGAGCTGGTGTCGCTGCAAAAGAAACTCAAGGGCACCGAAGATGAACTGGACAAATATTCTGAGGCTCTCAA
AGATGCCCAGGAGAAGCTGGAGCTGGCAGAGAAAAAGGCCACCGATGCTGAAGCTGACGTAGCTTCTCTGAACAGACGCA
TCCAGCTGGTTGAGGAAGAGTTGGATCGTGCCCAGGAGCGTCTGGCAACAGCTTTGCAGAAGCTGGAGGAAGCTGAGAAG
GCAGCAGATGAGAGTGAGAGAGGCATGAAAGTCATTGAAAGTCGAGCCCAAAAGGATGAAGAGAAAATGGAAATTCAGGA
GATCCAACTGAAAGAGGCCAAGCACATTGCTGAAGATGCCGACCGCAAATATGAAGAGGTGGCCCGTAAGCTTGTCATCA
TTGAGAGCGACCTGGAACGTGCAGAGGAGCGGGCTGAGCTCTCAGAAGGCAAATGTGCCGAGCTTGAAGAAGAATTGAAA
ACTGTGACGAACAACTTGAAGTCACTGGAGGCTCAGGCTGAGAAGTACTCGCAGAAGGAAGACAAATACGAGGAGGAGAT
CAAGGTCCTTTCCGACAAGCTGAAGGAGGCTGAGACTCGGGCTGAGTTTGCGGAGAGGTCAGTAACTAAATTGGAGAAAA
GCATTGATGACTTAGAAGAGAAAGTGGCTCATGCCAAAGAAGAAAACCTTAGTATGCATCAGATGCTGGATCAGACTTTA
CTGGAGTTAAACAACATGTGA
ATGGACGCCATCAAGAAGAAGATGCAGATGCTGAAGCTCGACAAGGAGAACGCCTTGGATCGAGCTGAGCAGGCGGAGGC
CGACAAGAAGGCGGCGGAAGACAGGAGCAAGCAGCTCGAGGAGGACATCGCGGCCAAGGAGAAGCTGCTGCGGGTGTCGG
AGGACGAGCGGGACCGGGTGCTGGAGGAGCTGCACAAGGCGGAGGACAGCCTCCTGGCCGCCGAGGAGGCCGCCGCCAAG
CTGGAAGATGAGCTGGTGTCGCTGCAAAAGAAACTCAAGGGCACCGAAGATGAACTGGACAAATATTCTGAGGCTCTCAA
AGATGCCCAGGAGAAGCTGGAGCTGGCAGAGAAAAAGGCCACCGATGCTGAAGCTGACGTAGCTTCTCTGAACAGACGCA
TCCAGCTGGTTGAGGAAGAGTTGGATCGTGCCCAGGAGCGTCTGGCAACAGCTTTGCAGAAGCTGGAGGAAGCTGAGAAG
GCAGCAGATGAGAGTGAGAGAGGCATGAAAGTCATTGAAAGTCGAGCCCAAAAGGATGAAGAGAAAATGGAAATTCAGGA
GATCCAACTGAAAGAGGCCAAGCACATTGCTGAAGATGCCGACCGCAAATATGAAGAGGTGGCCCGTAAGCTTGTCATCA
TTGAGAGCGACCTGGAACGTGCAGAGGAGCGGGCTGAGCTCTCAGAAGGCAAATGTGCCGAGCTTGAAGAAGAATTGAAA
ACTGTGACGAACAACTTGAAGTCACTGGAGGCTCAGGCTGAGAAGTACTCGCAGAAGGAAGACAAATACGAGGAGGAGAT
CAAGGTCCTTTCCGACAAGCTGAAGGAGGCTGAGACTCGGGCTGAGTTTGCGGAGAGGTCAGTAACTAAATTGGAGAAAA
GCATTGATGACTTAGAAGAGAAAGTGGCTCATGCCAAAGAAGAAAACCTTAGTATGCATCAGATGCTGGATCAGACTTTA
CTGGAGTTAAACAACATGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 64 .71 RPM |
| SRP051959_skeletal_muscle | 1671 .70 RPM |
| SRP051959_lymph_node | 29 .06 RPM |
| SRP051959_lung | 84 .75 RPM |
| SRP051959_liver | 28 .33 RPM |
| SRP051959_kidney | 59 .77 RPM |
| SRP051959_heart | 820 .43 RPM |
| SRP051959_colon | 180 .61 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000016966 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000012788 | ortholog_one2one | 11 retrogenes | |
| Callithrix jacchus | ENSCJAG00000009627 | within_species_paralog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000009747 | within_species_paralog | 9 retrogenes | |
| Callithrix jacchus | ENSCJAG00000014135 | within_species_paralog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000014581 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000006534 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000009955 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000003762 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000003277 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_691 | 93.68 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2200 | 69.67 | 99.18 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000004355 retrocopies