Parental gene:

CAPZA1, ENSCJAG00000013548

Aliases:None
Description:capping protein (actin filament) muscle Z-line, alpha 1 [Source:HGNC Symbol;Acc:1488]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:148614393..148666710(+)


>ENSCJAG00000013548
AAACAGGACACTTTTTTCAAGGGATGTGATGAAAATTTTGTACGCATAGCTGCTAAGTTCATCACTCATGCACCCCCAGG
GGAATTTAATGAAGTATTTAATGATGTTCGGCTACTACTTAATAATGACAATCTCCTCAGGGAAGGGGCAGCACATGCAT
TTGCCCAGTATAACATGGATCAGTTCACGCCTGTGAAGATAGAAGGATATGAAGATCAGGTCTTAATTACAGAGCATGGT
GACCTGGGTAATAGCAGATTTTTAGATCCAAGAAACAAAATTTCCTTTAAATTTGATCACCTACGGAAAGAAGCAAGTGA
CCCCCAGCCAGAAGAAGTTGATGGAGGTCTGAAGTCTTGGAGAGAATCCTGTGACAGTGCTTTAAGAGCCTATGTGAAAG
ACCATTATTCCAACGGCTTTTGTACTGCCGTTTATGCTAAAACTATTGATGGGCAACAGACTATTATTGCATGTATTGAA
AGCCACCAGTTTCAGCCTAAAAACTTCTGGAATGGTCGTTGGAGATCAGAGTGGAAGTTCACCATCACACCACCTACCGC
CCAGGTGGTTGGAGTGCTTAAGATTCAGGTTCACTATTATGAAGATGGCAATGTTCAGTTGGTCAGTCATAAAGATGTAC
AGGATTCACTAACTGTTTCGAATGAAGCCCAAACTGCCAAGGAGTTTATTAAAATCATAGAGAATGCAGAAAATGAGTAT
CAGACAGCAATTAGTGAAAACTATCAAACAATGTCAGATACCACATTCAAGGCCTTGCGCCGGCAGCTTCCCGTTACCCG
CACCAAAATCGACTGGAACAAGATACTCAGCTACAAGATTGGCAAAGAAATGCAGAATGCTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 92 .50 RPM
SRP051959_skeletal_muscle 16 .33 RPM
SRP051959_lymph_node 114 .84 RPM
SRP051959_lung 66 .75 RPM
SRP051959_liver 41 .44 RPM
SRP051959_kidney 43 .09 RPM
SRP051959_heart 25 .77 RPM
SRP051959_colon 60 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003570 ortholog_one2one 1 retrogene
retro_amel_219,
Cavia porcellus ENSCPOG00000014532 ortholog_one2one 1 retrogene
retro_cpor_1155,
Dipodomys ordii ENSDORG00000000671 ortholog_one2one 3 retrogenes
retro_dord_224, retro_dord_265, retro_dord_44,
Felis catus ENSFCAG00000013303 ortholog_one2one 2 retrogenes
retro_fcat_700, retro_fcat_746,
Homo sapiens ENSG00000116489 ortholog_one2one 2 retrogenes
retro_hsap_2338, retro_hsap_4871,
Gorilla gorilla ENSGGOG00000023677 ortholog_one2one 1 retrogene
retro_ggor_1216,
Latimeria chalumnae ENSLACG00000017963 ortholog_one2one 1 retrogene
retro_lcha_20,
Macaca mulatta ENSMMUG00000015668 ortholog_one2one 2 retrogenes
retro_mmul_2612, retro_mmul_942,
Mus musculus ENSMUSG00000070372 possible_ortholog 4 retrogenes
retro_mmus_179, retro_mmus_1828, retro_mmus_3370, retro_mmus_349,
Nomascus leucogenys ENSNLEG00000004191 ortholog_one2one 1 retrogene
retro_nleu_1689,
Oryctolagus cuniculus ENSOCUG00000000270 ortholog_one2many 6 retrogenes
retro_ocun_1315, retro_ocun_1417, retro_ocun_1787, retro_ocun_301, retro_ocun_527, retro_ocun_555,
Otolemur garnettii ENSOGAG00000014074 ortholog_one2one 4 retrogenes
retro_ogar_1640, retro_ogar_2159, retro_ogar_3217, retro_ogar_845,
Pongo abelii ENSPPYG00000001021 ortholog_one2one 2 retrogenes
retro_pabe_2116, retro_pabe_3789,
Pan troglodytes ENSPTRG00000001110 ortholog_one2one 2 retrogenes
retro_ptro_1710, retro_ptro_3245,
Rattus norvegicus ENSRNOG00000013538 possible_ortholog 1 retrogene
retro_rnor_77,
Tupaia belangeri ENSTBEG00000001727 ortholog_one2one 5 retrogenes
retro_tbel_1870, retro_tbel_3525, retro_tbel_4327, retro_tbel_638, retro_tbel_868,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2259 86.81 100.00
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2. retro_cjac_2850 87.80 100.00
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3. retro_cjac_4125 60.34 59.44
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Download FASTA sequences of all ENSCJAG00000013548 retrocopies