Parental gene:

CAPZA1, ENSLACG00000017963

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH126576.1:2549955..2575079(-)


>ENSLACG00000017963
TCTTCTGATTCACATCATGAAGGTACTAGCCCTCTGACTTGTATCGGGAAAGTGCGCATAGCTGCCACTTTCATCACCCA
TGCACCCCCTGGGGAATTTAATGAAGTTTTTAACGATGTTCGATTGTTGCTCAACAATGACAATGTTCTCAGGGAAGGGG
CTGCGCATGCATTTGCTCAGTATAACATGGACCAGTTCACTCCAGCTAAAATTGAGGGGCATGATGATCAGGTTCTGATT
ACGGAACATGGCGATCTGGGCAACAGCAGATTTTTAGACCCACGAAACAAACTCTCTTTTAAATTTGATCACTTGAGGAA
AGAAGCTAGTGATCCTCAGTATCATGATGTGGAAGCAGCTGTGAAGCCATGGAGAGATGCTTGTGACAGTGCATTAAGAG
CTTATGTGAAAGAGCACTATCCCACTGGAATTTGCACTGTGTATGGTAAAACCATAGATGGACAGCAGACTGTCATTGCT
TGTGTCGAAAGCCACCAGTTTCAACCCAAAAATTTCTGGAATGGCCGCTGGAGATCTGAATGGAAATTCACTGTTACACC
ACCAACAGCACAAGTGGTTGGAGTCCTTAAAATTCAGGTTCATTACTATGAAGATGGTAATGTCCAGCTCGTTAGTCATA
AGGATATACAAGAGTCTGTGACTGTTTCTAATGAGGCTCAAACTGCAAAGGAGTTCATTAAAATCATAGAGAATGCAGAA
AACGAGTATCAAACTGCAATCAGCGAGAACTACCAAGCCATGTCAGACACCACATTCAAAGCCTTACGCCGGCAGCTACC
TATCACACGCTCGAAGGTTGACTGGCACAAGATTCTCAACTACCAGATTGCCAAAGAGATGCAGAACCCTTTAAACTGA

Library Parental gene expression (RPM)
DRP000627_gill 67 .00 RPM
DRP000627_kidney 47 .76 RPM
DRP000627_pectoral_fin 15 .00 RPM
DRP000627_pelvic_fin 25 .29 RPM
DRP000627_pharynx 141 .14 RPM
DRP000627_tail_muscle 140 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003570 ortholog_one2many 1 retrogene
retro_amel_219,
Choloepus hoffmanni ENSCHOG00000004131 ortholog_one2one 8 retrogenes
retro_chof_1008, retro_chof_1419, retro_chof_1499, retro_chof_1704, retro_chof_1861, retro_chof_2129, retro_chof_625, retro_chof_711,
Callithrix jacchus ENSCJAG00000013548 ortholog_one2one 3 retrogenes
retro_cjac_2259, retro_cjac_2850, retro_cjac_4125,
Cavia porcellus ENSCPOG00000014532 ortholog_one2one 1 retrogene
retro_cpor_1155,
Dipodomys ordii ENSDORG00000000671 ortholog_one2one 3 retrogenes
retro_dord_224, retro_dord_265, retro_dord_44,
Felis catus ENSFCAG00000013303 ortholog_one2one 2 retrogenes
retro_fcat_700, retro_fcat_746,
Homo sapiens ENSG00000116489 ortholog_one2one 2 retrogenes
retro_hsap_2338, retro_hsap_4871,
Gorilla gorilla ENSGGOG00000023677 ortholog_one2one 1 retrogene
retro_ggor_1216,
Myotis lucifugus ENSMLUG00000009796 ortholog_one2one 1 retrogene
retro_mluc_2483,
Macaca mulatta ENSMMUG00000015668 ortholog_one2one 2 retrogenes
retro_mmul_2612, retro_mmul_942,
Mustela putorius furo ENSMPUG00000004977 ortholog_one2one 1 retrogene
retro_mputfur_616,
Mus musculus ENSMUSG00000070372 ortholog_one2many 4 retrogenes
retro_mmus_179, retro_mmus_1828, retro_mmus_3370, retro_mmus_349,
Nomascus leucogenys ENSNLEG00000004191 ortholog_one2one 1 retrogene
retro_nleu_1689,
Oryctolagus cuniculus ENSOCUG00000000270 ortholog_one2many 6 retrogenes
retro_ocun_1315, retro_ocun_1417, retro_ocun_1787, retro_ocun_301, retro_ocun_527, retro_ocun_555,
Otolemur garnettii ENSOGAG00000014074 ortholog_one2one 4 retrogenes
retro_ogar_1640, retro_ogar_2159, retro_ogar_3217, retro_ogar_845,
Pongo abelii ENSPPYG00000001021 ortholog_one2one 2 retrogenes
retro_pabe_2116, retro_pabe_3789,
Pan troglodytes ENSPTRG00000001110 ortholog_one2one 2 retrogenes
retro_ptro_1710, retro_ptro_3245,
Rattus norvegicus ENSRNOG00000013538 ortholog_one2many 1 retrogene
retro_rnor_77,
Sorex araneus ENSSARG00000001278 ortholog_one2one 1 retrogene
retro_sara_166,
Ictidomys tridecemlineatus ENSSTOG00000015956 ortholog_one2many 1 retrogene
retro_itri_1044,
Tupaia belangeri ENSTBEG00000001727 ortholog_one2one 5 retrogenes
retro_tbel_1870, retro_tbel_3525, retro_tbel_4327, retro_tbel_638, retro_tbel_868,
Tarsius syrichta ENSTSYG00000006259 ortholog_one2one 2 retrogenes
retro_tsyr_179, retro_tsyr_471,
Vicugna pacos ENSVPAG00000005361 ortholog_one2one 1 retrogene
retro_vpac_579,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_20 51.28 94.79
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Download FASTA sequences of all ENSLACG00000017963 retrocopies