Parental gene: | ENSOCUG00000000270 |
| Aliases: | None |
| Description: | None |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 13:51486240..51510254(-) |
>ENSOCUG00000000270
TCAGAAGATACTGATACTAGAAACAGCCATGGATGTTCTGTACGCATAGCTGCTAAATTCATCACTCATGCACCCCCAGG
AGAATTTAATGAAGTATTCAATGATGTCCGACTACTACTTAATAATGACAATCTCCTCAGGGAAGGGGCAGCACATGCAT
TTGCCCAGTATAACATGGATCAGTTCACGCCTGTGAAGATAGAAGGATATGAAGATCAGGTCTTAATTACAGAGCACGGT
GACCTGGGTAATAGCAGATTTTTAGATCCAAGAAACAAAATTTCCTTTAAGTTTGATCACTTACGGAAAGAAGCAAGTGA
TCCCCAGCCAGAGGAAGTAGATGGAGGCTTGAAGTCGTGGAGAGAATCCTGTGACAGTGCTTTGAGAGCCTATGTGAAAG
ATCATTATTCCAACGGCTTCTGTACTGTAGTGTATGCTAAAACTATAGATGGGCAGCAGACTATTATTGCATGTATTGAA
AGCCACCAATTTCAGCCTAAAAACTTCTGGAATGGTCGTTGGAGATCAGAGTGGAAATTCACCATCACACCACCTACAGC
CCAAGTGGTTGGAGTGCTTAAGATTCAGGTTCACTATTACGAAGACGGCAATGTTCAGTTGGTTAGTCATAAAGATGTAC
AAGACTCAATAACTGTGTCGAATGAAATACAAACTGCCAAGGAGTTTATTAAAATCATAGAGAATGCAGAAAATGAATAT
CAGACAGCAATTAGTGAAAACTATCAAACCATGTCAGACACCACATTCAAGGCCTTGCGCCGGCAACTTCCAGTTACCCG
CACCAAAATCGACTGGAACAAGATACTCAGCTACAAGATTGGCAAAGAAATGCAGAATGCTTAA
TCAGAAGATACTGATACTAGAAACAGCCATGGATGTTCTGTACGCATAGCTGCTAAATTCATCACTCATGCACCCCCAGG
AGAATTTAATGAAGTATTCAATGATGTCCGACTACTACTTAATAATGACAATCTCCTCAGGGAAGGGGCAGCACATGCAT
TTGCCCAGTATAACATGGATCAGTTCACGCCTGTGAAGATAGAAGGATATGAAGATCAGGTCTTAATTACAGAGCACGGT
GACCTGGGTAATAGCAGATTTTTAGATCCAAGAAACAAAATTTCCTTTAAGTTTGATCACTTACGGAAAGAAGCAAGTGA
TCCCCAGCCAGAGGAAGTAGATGGAGGCTTGAAGTCGTGGAGAGAATCCTGTGACAGTGCTTTGAGAGCCTATGTGAAAG
ATCATTATTCCAACGGCTTCTGTACTGTAGTGTATGCTAAAACTATAGATGGGCAGCAGACTATTATTGCATGTATTGAA
AGCCACCAATTTCAGCCTAAAAACTTCTGGAATGGTCGTTGGAGATCAGAGTGGAAATTCACCATCACACCACCTACAGC
CCAAGTGGTTGGAGTGCTTAAGATTCAGGTTCACTATTACGAAGACGGCAATGTTCAGTTGGTTAGTCATAAAGATGTAC
AAGACTCAATAACTGTGTCGAATGAAATACAAACTGCCAAGGAGTTTATTAAAATCATAGAGAATGCAGAAAATGAATAT
CAGACAGCAATTAGTGAAAACTATCAAACCATGTCAGACACCACATTCAAGGCCTTGCGCCGGCAACTTCCAGTTACCCG
CACCAAAATCGACTGGAACAAGATACTCAGCTACAAGATTGGCAAAGAAATGCAGAATGCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 13 .72 RPM |
| SRP017611_kidney | 21 .99 RPM |
| SRP017611_brain | 20 .70 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003570 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000004131 | possible_ortholog | 8 retrogenes | |
| Callithrix jacchus | ENSCJAG00000013548 | ortholog_one2many | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000014532 | ortholog_one2many | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000000671 | ortholog_one2many | 3 retrogenes | |
| Felis catus | ENSFCAG00000013303 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000116489 | ortholog_one2many | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000023677 | ortholog_one2many | 1 retrogene | |
| Latimeria chalumnae | ENSLACG00000017963 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000009796 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000015668 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000004977 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000070372 | possible_ortholog | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000004191 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000003591 | within_species_paralog | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000014074 | ortholog_one2many | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000001021 | ortholog_one2many | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000001110 | ortholog_one2many | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000013538 | possible_ortholog | 1 retrogene | |
| Sorex araneus | ENSSARG00000001278 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000015956 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000001727 | ortholog_one2many | 5 retrogenes | |
| Tarsius syrichta | ENSTSYG00000006259 | possible_ortholog | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000005361 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_301 | 72.73 | 60.28 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_527 | 70.00 | 58.89 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_555 | 73.84 | 59.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ocun_1315 | 95.41 | 98.26 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ocun_1417 | 85.26 | 53.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ocun_1787 | 92.63 | 99.30 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000000270 retrocopies