Parental gene:

CAPZA1, ENSCPOG00000014532

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_2:37058406..37086376(+)


>ENSCPOG00000014532
TTTATTATAATAGTAAGTGATTCAGAAAAGGTACGCATAGCTGCTAAATTCATCACTCATGCACCCCCAGGGGAGTTTAA
TGAAGTGTTCAATGATGTCCGGCTACTACTTAACAATGACAATCTCCTCAGGGAAGGGGCAGCTCATGCATTTGCCCAGT
ATAACATGGATCAGTTCACACCTGTGAAGATAGAAGGATATGAAGATCAGGTTTTAATTACAGAGCATGGTGATCTGGGT
AATAGCAGATTTTTAGATCCAAGAAACAAAATTTCCTTTAAGTTTGATCACTTACGGAAAGAAGCGAGTGACCCTCATCC
AGAGGAAATAGATGGAAGTTTGAAGTCTTGGAGAGAGTCCTGTGACAGTGCTTTAAGAGCCTATGTGAAAGATCATTATT
CCAACGGCTTCTGTACTGAAGTATATGCTAAAACTATAGATGGGCAACAGACTATTATTGCATGTATTGAAAGCCACCAG
TTCCAGCCTAAAAATTTCTGGAATGGTCGTTGGAGGTCTGAATGGAAGTTCACCATCACACCACCTACAGCACAGGTGGT
TGGAGTGCTCAAGATTCAGGTTCACTATTATGAAGATGGCAATGTTCAATTGGTTAGTCATAAAGATGTGCAAGATTCAG
TAAATGTTTCGAATGAAGGCCAAACTGCTAAGGAGTTTATTAAAATCATAGAGAATGCAGAAAATGAATATCAGACAGCA
ATTAGTGAAAACTATCAAACAATGTCAGATACCACGTTCAAAGCCTTGCGCCGACAGCTCCCAGTAACCCGCACCAAAAT
CGACTGGAACAAGATACTCAGCTACAAGATTGGCAAAGAAATGCAGAATGCTTAA

Library Parental gene expression (RPM)
SRP017611_brain 15 .13 RPM
SRP017611_kidney 42 .61 RPM
SRP017611_liver 39 .61 RPM
SRP040447_lung 55 .51 RPM
SRP040447_skeletal_muscle 19 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003570 ortholog_one2one 1 retrogene
retro_amel_219,
Callithrix jacchus ENSCJAG00000013548 ortholog_one2one 3 retrogenes
retro_cjac_2259, retro_cjac_2850, retro_cjac_4125,
Cavia porcellus ENSCPOG00000007677 within_species_paralog 1 retrogene
retro_cpor_205,
Dipodomys ordii ENSDORG00000000671 ortholog_one2one 3 retrogenes
retro_dord_224, retro_dord_265, retro_dord_44,
Felis catus ENSFCAG00000013303 ortholog_one2one 2 retrogenes
retro_fcat_700, retro_fcat_746,
Homo sapiens ENSG00000116489 ortholog_one2one 2 retrogenes
retro_hsap_2338, retro_hsap_4871,
Gorilla gorilla ENSGGOG00000023677 ortholog_one2one 1 retrogene
retro_ggor_1216,
Latimeria chalumnae ENSLACG00000017963 ortholog_one2one 1 retrogene
retro_lcha_20,
Macaca mulatta ENSMMUG00000015668 ortholog_one2one 2 retrogenes
retro_mmul_2612, retro_mmul_942,
Mus musculus ENSMUSG00000070372 possible_ortholog 4 retrogenes
retro_mmus_179, retro_mmus_1828, retro_mmus_3370, retro_mmus_349,
Nomascus leucogenys ENSNLEG00000004191 ortholog_one2one 1 retrogene
retro_nleu_1689,
Oryctolagus cuniculus ENSOCUG00000000270 ortholog_one2many 6 retrogenes
retro_ocun_1315, retro_ocun_1417, retro_ocun_1787, retro_ocun_301, retro_ocun_527, retro_ocun_555,
Otolemur garnettii ENSOGAG00000014074 ortholog_one2one 4 retrogenes
retro_ogar_1640, retro_ogar_2159, retro_ogar_3217, retro_ogar_845,
Pongo abelii ENSPPYG00000001021 ortholog_one2one 2 retrogenes
retro_pabe_2116, retro_pabe_3789,
Pan troglodytes ENSPTRG00000001110 ortholog_one2one 2 retrogenes
retro_ptro_1710, retro_ptro_3245,
Rattus norvegicus ENSRNOG00000013538 possible_ortholog 1 retrogene
retro_rnor_77,
Tupaia belangeri ENSTBEG00000001727 ortholog_one2one 5 retrogenes
retro_tbel_1870, retro_tbel_3525, retro_tbel_4327, retro_tbel_638, retro_tbel_868,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1155 71.43 55.63
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Download FASTA sequences of all ENSCPOG00000014532 retrocopies