Parental gene:

DPPA2, ENSCJAG00000020168

Aliases:None
Description:developmental pluripotency associated 2 [Source:HGNC Symbol;Acc:19197]
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:87415171..87428898(+)


>ENSCJAG00000020168
ATGTCAGACTCAAATTTGGATAACACTAAGAAGAATTTCTTTGAGGGGGAAGTAGATGATGAGGAAAGTGTGATTTTGAC
ACTGGTGCCAGTTAAAGATGACTCAGATATGGAACAAATGGAACCAAGTGTTTCAACTTCTGATGTCAAACTGGAGAAGC
CTAAGAAATACAATCAAGGTAATCTACTTCAAACAAATGAACGATTTACAGCTCCACGAAAAGCTAGATGCAAGATACCA
GCCCCTCCCTTGCCGACCATTTTGCCTCCTATTAATAAGGTGTGTCGGGACACTTTGCGGAACTGGTGTCAAGAACTTGG
TTTGAATACGACGGGCAAGAAAATAGAACTTTATCTGAGGCTCCATGGGCATGCTTACCCTGAACAACAGCAAGATATGC
CTGAAATGTTACAAGAGACCAGAGAACAGCGGTGTTCAGGGAAATGCAAGGCAGTGACCAAGACAGCAAGGCTTCAGAAA
AGATTTGAGATGAATGAGAGAGCAGAAGAGACTAATACAGTTGAAGTGATAACTTCAGCGCAGGAAGCCATGTTGGCATC
GTGGGCAAGAATTGCTGCCAGAGCTGTTCAGCCTAAGACTGTGAATGTGTGTTCCATCCGCGTTTCTGTTGACGCCTTTC
TGATGCAAGCTTCTGGTGTCAGGTGGTGTGTGGTCCACGGCCAGCTTCTCTCAGCAGACACAAAGGGTTGGGTGCGCCTG
CAGTTTCATGCAGGCCAGGCCTGGGTGCCTACCACTCACAGGAGGATGATTTCTCTCTTCTTGTTACCTGCCTGCATCTT
CCCATCCCCAGACATAGAAGATAATATGTTATGCCCTGACTGTGCTAAGAGGAATAAGAAGATGATGAAAAGATTAATGA
CAATAGAGAAGTAG

Library Parental gene expression (RPM)
SRP051959_colon 0 .00 RPM
SRP051959_heart 0 .00 RPM
SRP051959_kidney 0 .00 RPM
SRP051959_liver 0 .00 RPM
SRP051959_lung 0 .00 RPM
SRP051959_lymph_node 0 .00 RPM
SRP051959_skeletal_muscle 0 .00 RPM
SRP051959_spleen 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020460 ortholog_one2many 2 retrogenes
retro_btau_435, retro_btau_529,
Callithrix jacchus ENSCJAG00000020171 within_species_paralog 2 retrogenes
retro_cjac_1334, retro_cjac_1491,
Dasypus novemcinctus ENSDNOG00000010745 ortholog_one2one 6 retrogenes
retro_dnov_1248, retro_dnov_1626, retro_dnov_1714, retro_dnov_2462, retro_dnov_2583, retro_dnov_2656,
Erinaceus europaeus ENSEEUG00000008944 ortholog_one2one 4 retrogenes
retro_eeur_205, retro_eeur_415, retro_eeur_426, retro_eeur_616,
Echinops telfairi ENSETEG00000007985 ortholog_one2one 4 retrogenes
retro_etel_2051, retro_etel_2058, retro_etel_506, retro_etel_918,
Homo sapiens ENSG00000163530 ortholog_one2one 3 retrogenes
retro_hsap_1642, retro_hsap_2903, retro_hsap_357,
Microcebus murinus ENSMICG00000013744 ortholog_one2one 6 retrogenes
retro_mmur_1171, retro_mmur_156, retro_mmur_1634, retro_mmur_213, retro_mmur_598, retro_mmur_955,
Myotis lucifugus ENSMLUG00000007444 ortholog_one2one 1 retrogene
retro_mluc_1706,
Macaca mulatta ENSMMUG00000022112 ortholog_one2many 3 retrogenes
retro_mmul_1550, retro_mmul_342, retro_mmul_475,
Monodelphis domestica ENSMODG00000018083 ortholog_one2many 3 retrogenes
retro_mdom_1057, retro_mdom_1478, retro_mdom_999,
Mus musculus ENSMUSG00000072419 ortholog_one2one 7 retrogenes
retro_mmus_1303, retro_mmus_1832, retro_mmus_1847, retro_mmus_2391, retro_mmus_2935, retro_mmus_3699, retro_mmus_394,
Nomascus leucogenys ENSNLEG00000004020 ortholog_one2one 2 retrogenes
retro_nleu_1329, retro_nleu_633,
Oryctolagus cuniculus ENSOCUG00000003175 ortholog_one2many 1 retrogene
retro_ocun_61,
Otolemur garnettii ENSOGAG00000031228 ortholog_one2many 7 retrogenes
retro_ogar_1678, retro_ogar_1722, retro_ogar_1953, retro_ogar_2404, retro_ogar_2567, retro_ogar_2900, retro_ogar_586,
Ochotona princeps ENSOPRG00000005059 ortholog_one2one 1 retrogene
retro_opri_433,
Pongo abelii ENSPPYG00000013566 ortholog_one2one 3 retrogenes
retro_pabe_1360, retro_pabe_2401, retro_pabe_346,
Pan troglodytes ENSPTRG00000015199 ortholog_one2one 3 retrogenes
retro_ptro_1113, retro_ptro_1962, retro_ptro_281,
Sarcophilus harrisii ENSSHAG00000017398 ortholog_one2many 1 retrogene
retro_shar_542,
Tupaia belangeri ENSTBEG00000006212 ortholog_one2one 1 retrogene
retro_tbel_3864,
Tursiops truncatus ENSTTRG00000009500 ortholog_one2one 1 retrogene
retro_ttru_1524,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_944 78.49 56.23
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2. retro_cjac_1378 72.73 61.95
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3. retro_cjac_1991 70.33 60.94
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4. retro_cjac_3832 67.03 60.94
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Download FASTA sequences of all ENSCJAG00000020168 retrocopies