RetrogeneDB ID: | retro_tbel_3864 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_2463:14118..14594(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DPPA2 | ||
Ensembl ID: | ENSTBEG00000006212 | ||
Aliases: | None | ||
Description: | developmental pluripotency associated 2 [Source:HGNC Symbol;Acc:19197] |
Percent Identity: | 75.62 % |
Parental protein coverage: | 53.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TPQEARLRSRRCKAKKEMLEKSYKMS--EEEMNVVEVISSAQETMMASWARIAARAVRPKAANSCPIPPL |
TPQ.ARL..R..K..KEML.KSYKMS..EEE.N.VEVI.SAQE.MM.SW.RI.ARAV.PKA.N.C.IPP. | |
Retrocopy | TPQDARLHLRKWKEEKEMLKKSYKMSKGEEETNIVEVIFSAQEAMMMSWVRISARAVQPKATNLCLIPPS |
Parental | VVAFLPQVSGV-RWCVVHGRPLPADTKGWVRLQFRAGQAWVPNTPRRMISLFLLPACTFPSPELEDNMLC |
VVA.LPQVSGV..WCVVHGR.L.ADTK.WV.LQF.AGQAWV.NTPRRMISLFLL..CTFPSP.LE.N.LC | |
Retrocopy | VVALLPQVSGV<QWCVVHGRLLQADTKNWVHLQFQAGQAWVSNTPRRMISLFLLSTCTFPSPGLEGNVLC |
Parental | PECAERNKKIMKRLITMKKT |
P.CAERN.K.MKRLITMKKT | |
Retrocopy | PKCAERNMKMMKRLITMKKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |