Parental gene: | DPPA2, ENSPPYG00000013566 |
| Aliases: | None |
| Description: | developmental pluripotency associated 2 [Source:HGNC Symbol;Acc:19197] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 3:23529095..23548048(+) |
>ENSPPYG00000013566
ATGTCAGACGCAAATTTGGATAGCAGCAAGAAGAATTTCTTTGAGGGGGAAGTAGATGATGAGGAAAGTGTGATTTTGAC
ACTGGTGCCAGTTAAAGATGACGCAAATATGGAACAAATGGAACCAAGTGTTTCTTCAACTTCTGATGTCAAACTGGAGA
AGCCTAAGAAATACAATCAAGGTCATCTACTTCAAACAAATGAACAATTTACAGCTCCACAAAAAGCTAGATGCAAAATA
CCAGCCCTTCCCTTGCCGACCATCTTGCCTCCCATTAATAAGGTGTGTCGGGACACTTTGCGGGACTGGTGTCAACAACT
CGGTTTGAGTACTAATGGCAAGAAAATCGAAGTTTATCTGAGGCTCCATAGGCATGCTTACCCTGAACAACGGCAAGATA
TGCCTGAAATGTCACAAGAGACCAGATTACAGCGATGTTCGAGGAAACGGAAGGCAGTGACCAAGAGAGCAAGGCTTCAG
AAAAGTTATGAGATGAATGGGAGAGCAGAAGAAGAAGAGACCAATACAGTTGAAGTGATAACTTCTGCACCGGGAGCCAT
GTTGGCATCATGGGCAAGAATTGCTGCAAGAGCTGTTCAGCCTAAGGCTTTGAATTCATGTTCCATTCGTGTTTCTGTTG
AGGCCTTTTTGATGCAAGCCTCTGGTGTCAGGTGGTGTGTGGTCCATGGCAGACTTCTCTCGGCAGACACAAAGGGTTGG
GTACGCCTGCAGTTTCATGCAGGTCAGGCCTGGGTGCCAACCACTCACAGGAGGATGATTTCTCTCTTCTTGTTACCTGC
CTGCATTTTCCCATCCCCAGGCATAGAAGATAATTTGTTATGCCCCGACTGTGCTAAGAGGAATAAGAAGATGATGAAAA
GATTAATGACACTAGAGAAGTAG
ATGTCAGACGCAAATTTGGATAGCAGCAAGAAGAATTTCTTTGAGGGGGAAGTAGATGATGAGGAAAGTGTGATTTTGAC
ACTGGTGCCAGTTAAAGATGACGCAAATATGGAACAAATGGAACCAAGTGTTTCTTCAACTTCTGATGTCAAACTGGAGA
AGCCTAAGAAATACAATCAAGGTCATCTACTTCAAACAAATGAACAATTTACAGCTCCACAAAAAGCTAGATGCAAAATA
CCAGCCCTTCCCTTGCCGACCATCTTGCCTCCCATTAATAAGGTGTGTCGGGACACTTTGCGGGACTGGTGTCAACAACT
CGGTTTGAGTACTAATGGCAAGAAAATCGAAGTTTATCTGAGGCTCCATAGGCATGCTTACCCTGAACAACGGCAAGATA
TGCCTGAAATGTCACAAGAGACCAGATTACAGCGATGTTCGAGGAAACGGAAGGCAGTGACCAAGAGAGCAAGGCTTCAG
AAAAGTTATGAGATGAATGGGAGAGCAGAAGAAGAAGAGACCAATACAGTTGAAGTGATAACTTCTGCACCGGGAGCCAT
GTTGGCATCATGGGCAAGAATTGCTGCAAGAGCTGTTCAGCCTAAGGCTTTGAATTCATGTTCCATTCGTGTTTCTGTTG
AGGCCTTTTTGATGCAAGCCTCTGGTGTCAGGTGGTGTGTGGTCCATGGCAGACTTCTCTCGGCAGACACAAAGGGTTGG
GTACGCCTGCAGTTTCATGCAGGTCAGGCCTGGGTGCCAACCACTCACAGGAGGATGATTTCTCTCTTCTTGTTACCTGC
CTGCATTTTCCCATCCCCAGGCATAGAAGATAATTTGTTATGCCCCGACTGTGCTAAGAGGAATAAGAAGATGATGAAAA
GATTAATGACACTAGAGAAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM |
| SRP007412_cerebellum | 0 .00 RPM |
| SRP007412_heart | 0 .00 RPM |
| SRP007412_kidney | 0 .20 RPM |
| SRP007412_liver | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000020460 | ortholog_one2many | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000020168 | ortholog_one2one | 4 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000010745 | ortholog_one2one | 6 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000008944 | ortholog_one2one | 4 retrogenes | |
| Echinops telfairi | ENSETEG00000007985 | ortholog_one2one | 4 retrogenes | |
| Homo sapiens | ENSG00000163530 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000013744 | ortholog_one2one | 6 retrogenes | |
| Myotis lucifugus | ENSMLUG00000007444 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000022112 | ortholog_one2many | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000018083 | ortholog_one2many | 3 retrogenes | |
| Mus musculus | ENSMUSG00000072419 | ortholog_one2one | 7 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000004020 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000003175 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000031228 | ortholog_one2many | 7 retrogenes | |
| Ochotona princeps | ENSOPRG00000005059 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000013565 | within_species_paralog | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000015199 | ortholog_one2one | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000017398 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000006212 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000009500 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_346 | 87.75 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1360 | 79.67 | 60.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2401 | 86.42 | 52.67 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000013566 retrocopies