RetrogeneDB ID: | retro_dnov_2462 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_7686:26328..26793(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DPPA2 | ||
Ensembl ID: | ENSDNOG00000010745 | ||
Aliases: | None | ||
Description: | developmental pluripotency associated 2 [Source:HGNC Symbol;Acc:19197] |
Percent Identity: | 94.94 % |
Parental protein coverage: | 55.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PQEAKLQSCTKRCKAAKDQKSCKKREKEEVTNTVEVISSAQEAILASWTRIAARAAQPKTVNSCPIPTSV |
PQEAKLQSCTKRCK.AKDQKSCKKREKEEVTNTVEVISS.QEAILASWTRIAARAAQ.KTVNSCPIPTSV | |
Retrocopy | PQEAKLQSCTKRCKVAKDQKSCKKREKEEVTNTVEVISSVQEAILASWTRIAARAAQLKTVNSCPIPTSV |
Parental | ETFLLQASGVRWCVVHGRVLPADTKGWVRLQFHAGQVWVPDTPKRMISLFLLPACTFPSADVEDNMLCPD |
ETFLLQ.SGVRWCVVHGRVLPADTKGWVRLQFHAGQVWVPDTPKRMISLFLL.ACTFPSAD...NMLCPD | |
Retrocopy | ETFLLQVSGVRWCVVHGRVLPADTKGWVRLQFHAGQVWVPDTPKRMISLFLLLACTFPSAD---NMLCPD |
Parental | CVKRNKKLMKRLIIIGKE |
CVKRNKKLMKRLIIIGKE | |
Retrocopy | CVKRNKKLMKRLIIIGKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 0 .00 RPM |
SRP012922_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP012922_heart | 0 .00 RPM | 0 .00 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .00 RPM |
SRP012922_liver | 0 .00 RPM | 0 .00 RPM |
SRP012922_lung | 0 .15 RPM | 0 .00 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .00 RPM |
SRP012922_spleen | 0 .00 RPM | 0 .00 RPM |